Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC007919.1-201ENST00000429380 217 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS28Q9UK41 RPL23AP22-201ENST00000437556 453 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 PIGFP3-201ENST00000441918 722 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 AC020550.1-201ENST00000447385 163 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.47□□□□□ -1.85
VPS28Q9UK41 ZNF736P5Y-201ENST00000451173 805 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 AC097262.1-201ENST00000452559 548 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 RPL23AP67-201ENST00000465341 474 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 AC091153.1-201ENST00000466297 402 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 RN7SL601P-201ENST00000471221 293 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 SETP11-201ENST00000473027 690 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 AP000797.1-201ENST00000478870 387 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS28Q9UK41 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS28Q9UK41 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.47□□□□□ -1.85
VPS28Q9UK41 HSPD1P15-201ENST00000505573 1122 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 APOOP4-201ENST00000513530 597 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
VPS28Q9UK41 AC123904.2-201ENST00000548059 300 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 ZNF519P3-201ENST00000557158 1032 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC3.47□□□□□ -1.85
VPS28Q9UK41 AC034105.3-201ENST00000565294 442 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.47□□□□□ -1.85
VPS28Q9UK41 MIR4276-201ENST00000584832 70 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 AC083760.1-201ENST00000589621 670 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 AP001981.2-201ENST00000603241 418 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 AC012468.1-201ENST00000604888 430 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 AC007179.3-201ENST00000604976 235 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 AC121334.2-201ENST00000605387 271 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 AP003122.6-201ENST00000623831 495 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 AL136313.1-201ENST00000624804 202 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS28Q9UK41 AC010149.2-201ENST00000637608 315 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
VPS28Q9UK41 MTND5P1-201ENST00000445440 1375 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.85
VPS28Q9UK41 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.46□□□□□ -1.85
VPS28Q9UK41 RNA5SP267-201ENST00000364893 126 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 SNORD115.1-201ENST00000391109 76 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS28Q9UK41 ELOCP17-201ENST00000414751 326 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS28Q9UK41 AL158156.1-201ENST00000422509 473 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS28Q9UK41 BNIP3P2-201ENST00000441221 577 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 EPS15P1-201ENST00000448836 336 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 KATNBL1P6-201ENST00000453433 915 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 snoU13.22-201ENST00000459428 104 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 AL358832.1-201ENST00000497800 389 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 MTND5P13-201ENST00000513046 1079 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS28Q9UK41 AC010265.1-201ENST00000513509 211 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS28Q9UK41 AC022616.6-201ENST00000520479 119 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS28Q9UK41 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS28Q9UK41 MRPS36P5-201ENST00000551909 298 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.46□□□□□ -1.86
VPS28Q9UK41 AC135628.1-201ENST00000568867 534 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 MIR3146-201ENST00000580367 79 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 MIR4293-201ENST00000584305 78 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS28Q9UK41 AL022161.1-201ENST00000604390 213 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 AL359999.1-201ENST00000604513 294 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 AC008277.2-201ENST00000605196 797 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 AC105129.3-201ENST00000605455 485 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 AC073308.1-201ENST00000623696 305 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 MAPK10-362ENST00000641864 4484 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 AC103988.1-201ENST00000566382 2177 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
VPS28Q9UK41 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.46□□□□□ -1.86
VPS28Q9UK41 AC093908.1-201ENST00000623125 8092 ntBASIC3.46□□□□□ -1.86
VPS28Q9UK41 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
VPS28Q9UK41 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS28Q9UK41 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS28Q9UK41 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
VPS28Q9UK41 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
VPS28Q9UK41 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
VPS28Q9UK41 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS28Q9UK41 RNU6-1284P-201ENST00000363701 100 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 RNA5SP387-201ENST00000364226 106 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 CASP3-203ENST00000393588 677 ntTSL 4 BASIC3.45□□□□□ -1.86
VPS28Q9UK41 AF228730.1-201ENST00000397972 663 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 RPL7P8-201ENST00000411964 730 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS28Q9UK41 MTND2P18-201ENST00000419962 1030 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS28Q9UK41 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS28Q9UK41 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS28Q9UK41 AC244035.1-201ENST00000430042 390 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS28Q9UK41 GAPDHP27-201ENST00000447427 1020 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS28Q9UK41 AL590365.1-201ENST00000450788 243 ntBASIC3.45□□□□□ -1.86
VPS28Q9UK41 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS28Q9UK41 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS28Q9UK41 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms