Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 MIR301A-201ENST00000385261 86 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 RNU2-9P-201ENST00000410194 145 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 FAR2P2-201ENST00000413041 594 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC4.26□□□□□ -1.73
DDX56Q9NY93 ISCA1P1-201ENST00000426679 387 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.26□□□□□ -1.73
DDX56Q9NY93 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC4.26□□□□□ -1.73
DDX56Q9NY93 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC4.26□□□□□ -1.73
DDX56Q9NY93 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
DDX56Q9NY93 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC4.26□□□□□ -1.73
DDX56Q9NY93 AC027673.1-201ENST00000456245 405 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 AL135752.1-201ENST00000479477 471 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 RPL31P61-201ENST00000496160 376 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC4.26□□□□□ -1.73
DDX56Q9NY93 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.26□□□□□ -1.73
DDX56Q9NY93 AC093840.1-201ENST00000511599 336 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 AC105417.1-201ENST00000514691 285 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 SNORA31.1-201ENST00000515993 133 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 SNORA31.5-201ENST00000516190 133 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 RNA5SP471-201ENST00000516971 106 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC4.26□□□□□ -1.73
DDX56Q9NY93 GNRHR2P1-201ENST00000555315 631 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC4.26□□□□□ -1.73
DDX56Q9NY93 AMZ2P1-203ENST00000565833 850 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC4.26□□□□□ -1.73
DDX56Q9NY93 AC024619.4-201ENST00000580924 316 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 AC136601.2-201ENST00000604356 474 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 HSPE1P7-201ENST00000604681 321 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 AL158032.1-201ENST00000605401 106 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 U4.5-201ENST00000617137 123 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 AC139792.3-201ENST00000623525 224 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 CR381653.2-201ENST00000624041 768 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC4.26□□□□□ -1.73
DDX56Q9NY93 U6.98-201ENST00000637157 84 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 AC068137.3-201ENST00000639191 341 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 AC073869.6-201ENST00000640656 341 ntBASIC4.26□□□□□ -1.73
DDX56Q9NY93 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
DDX56Q9NY93 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
DDX56Q9NY93 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
DDX56Q9NY93 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
DDX56Q9NY93 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
DDX56Q9NY93 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
DDX56Q9NY93 SNORD35B-201ENST00000363660 87 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 RNU6-217P-201ENST00000384164 104 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
DDX56Q9NY93 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
DDX56Q9NY93 RNU6-328P-201ENST00000390887 106 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 RPS4XP8-201ENST00000402039 771 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 MIR1251-201ENST00000408552 70 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 RNA5SP38-201ENST00000410750 119 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC4.25□□□□□ -1.73
DDX56Q9NY93 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.25□□□□□ -1.73
DDX56Q9NY93 RPL17P36-201ENST00000420302 549 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.25□□□□□ -1.73
DDX56Q9NY93 AL451062.2-201ENST00000427515 271 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 AC017083.1-201ENST00000428093 483 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 AL358472.1-201ENST00000431295 329 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 AC011742.1-201ENST00000431448 434 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 MTND1P4-201ENST00000435196 415 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 HSPD1P21-201ENST00000436541 245 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 RPL7P28-201ENST00000437739 740 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC4.25□□□□□ -1.73
DDX56Q9NY93 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC4.25□□□□□ -1.73
DDX56Q9NY93 AL356010.1-201ENST00000456364 102 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 RPS29P33-201ENST00000456717 146 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 AC092798.1-201ENST00000458542 409 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 U3.44-201ENST00000458938 192 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.25□□□□□ -1.73
DDX56Q9NY93 RPL7P5-201ENST00000471472 736 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 AC108475.1-201ENST00000507880 950 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 RNA5SP503-201ENST00000517047 117 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC4.25□□□□□ -1.73
DDX56Q9NY93 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.25□□□□□ -1.73
DDX56Q9NY93 MIR4644-201ENST00000579929 84 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 MIR5684-201ENST00000585074 65 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 AC067959.1-201ENST00000604334 379 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 AC130324.3-201ENST00000614165 542 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 AP001486.3-201ENST00000615334 372 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.25□□□□□ -1.73
DDX56Q9NY93 AC073308.1-201ENST00000623696 305 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
DDX56Q9NY93 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
DDX56Q9NY93 AC007656.2-201ENST00000624902 4547 ntBASIC4.25□□□□□ -1.73
DDX56Q9NY93 AC005183.1-201ENST00000603687 1979 ntBASIC4.24□□□□□ -1.73
DDX56Q9NY93 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
DDX56Q9NY93 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.24□□□□□ -1.73
DDX56Q9NY93 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
DDX56Q9NY93 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.24□□□□□ -1.73
DDX56Q9NY93 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC4.24□□□□□ -1.73
DDX56Q9NY93 AC009480.2-201ENST00000422916 432 ntBASIC4.24□□□□□ -1.73
DDX56Q9NY93 RPL23AP82-202ENST00000427528 469 ntBASIC4.24□□□□□ -1.73
DDX56Q9NY93 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC4.24□□□□□ -1.73
DDX56Q9NY93 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC4.24□□□□□ -1.73
DDX56Q9NY93 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC4.24□□□□□ -1.73
DDX56Q9NY93 RNU7-63P-201ENST00000459054 62 ntBASIC4.24□□□□□ -1.73
DDX56Q9NY93 RPL38P1-201ENST00000460914 211 ntBASIC4.24□□□□□ -1.73
DDX56Q9NY93 AC006512.1-201ENST00000468816 291 ntBASIC4.24□□□□□ -1.73
DDX56Q9NY93 RN7SL738P-201ENST00000470264 297 ntBASIC4.24□□□□□ -1.73
DDX56Q9NY93 TRBV1-201ENST00000476502 284 ntBASIC4.24□□□□□ -1.73
DDX56Q9NY93 MTND1P5-201ENST00000517906 940 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 187.5 ms