Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC008162.1-201ENST00000604718 254 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AL670379.1-201ENST00000604752 252 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AL670379.5-201ENST00000605253 252 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AL670379.12-201ENST00000605291 253 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AL670379.8-201ENST00000605353 252 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AL670379.7-201ENST00000605823 252 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AC025034.2-201ENST00000623264 286 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AC112200.1-201ENST00000625015 234 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 MIR4275-201ENST00000636486 87 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 TAB3P1-202ENST00000452645 1634 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.15□□□□□ -1.74
TDP1Q9NUW8 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
TDP1Q9NUW8 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
TDP1Q9NUW8 AL354685.2-201ENST00000448218 1447 ntBASIC4.15□□□□□ -1.74
TDP1Q9NUW8 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.74
TDP1Q9NUW8 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.15□□□□□ -1.74
TDP1Q9NUW8 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
TDP1Q9NUW8 Y_RNA.157-201ENST00000363638 102 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 RNU6-61P-201ENST00000365528 109 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 SMIM11P1-201ENST00000369586 178 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 RNU6-1029P-201ENST00000384109 107 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 TXNP7-201ENST00000406296 293 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 RNA5SP146-201ENST00000410743 123 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 RNU2-41P-201ENST00000410991 178 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 TOMM22P1-201ENST00000418578 312 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 AL513185.2-201ENST00000425543 193 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 MTND1P18-201ENST00000448191 573 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 AL500522.2-201ENST00000448562 343 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 AC034236.1-201ENST00000469891 373 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 AC004062.1-201ENST00000509926 645 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 RNA5SP503-201ENST00000517047 117 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 RNA5SP179-201ENST00000517284 121 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 CYCSP30-201ENST00000546447 172 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 AC093012.1-202ENST00000549403 582 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 OR4H12P-201ENST00000556269 907 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 AC006116.10-201ENST00000591836 581 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 AC091167.4-201ENST00000605079 184 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 AC064801.1-201ENST00000612025 407 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 AC130324.3-201ENST00000614165 542 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 AP001486.3-201ENST00000615334 372 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 AL589994.2-201ENST00000621124 579 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 AC011155.2-201ENST00000623202 216 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 ASNSP3-201ENST00000451989 1306 ntBASIC4.15□□□□□ -1.75
TDP1Q9NUW8 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
TDP1Q9NUW8 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.14□□□□□ -1.75
TDP1Q9NUW8 AC009812.4-201ENST00000569134 1805 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 OR4G1P-203ENST00000641984 1631 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
TDP1Q9NUW8 AL139276.1-201ENST00000311910 1001 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 RNA5SP502-201ENST00000362694 119 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 RNU6-797P-201ENST00000363101 109 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 MIR30B-201ENST00000384850 88 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 RNU6-903P-201ENST00000391270 109 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.14□□□□□ -1.75
TDP1Q9NUW8 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.14□□□□□ -1.75
TDP1Q9NUW8 MTCO1P39-201ENST00000426148 480 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 MTATP6P4-201ENST00000427725 675 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC4.14□□□□□ -1.75
TDP1Q9NUW8 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.14□□□□□ -1.75
TDP1Q9NUW8 AC024082.2-201ENST00000434771 238 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC4.14□□□□□ -1.75
TDP1Q9NUW8 HMGN2P21-201ENST00000447764 270 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 AL118520.1-201ENST00000450770 291 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 AL162395.1-201ENST00000457882 422 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 RN7SL323P-201ENST00000494712 295 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC4.14□□□□□ -1.75
TDP1Q9NUW8 HMGB1P22-201ENST00000505315 124 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
TDP1Q9NUW8 LRRC34P2-201ENST00000514850 553 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 RNA5SP143-201ENST00000516936 115 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.14□□□□□ -1.75
TDP1Q9NUW8 MIR4703-201ENST00000577728 79 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 AC018638.8-201ENST00000588755 281 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.14□□□□□ -1.75
TDP1Q9NUW8 AL359314.1-201ENST00000616913 261 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 MIR6075-201ENST00000620782 95 ntBASIC4.14□□□□□ -1.75
TDP1Q9NUW8 AC099654.5-201ENST00000636479 350 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 145.4 ms