Protein–RNA interactions for Protein: Q96JB5

CDK5RAP3, CDK5 regulatory subunit-associated protein 3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3Q96JB5 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.24□□□□□ -1.73
CDK5RAP3Q96JB5 CR848007.1-201ENST00000442354 1699 ntBASIC4.24□□□□□ -1.73
CDK5RAP3Q96JB5 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CDK5RAP3Q96JB5 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
CDK5RAP3Q96JB5 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
CDK5RAP3Q96JB5 AL672296.1-201ENST00000427780 2158 ntBASIC4.24□□□□□ -1.73
CDK5RAP3Q96JB5 AC010733.2-201ENST00000589496 5702 ntBASIC4.24□□□□□ -1.73
CDK5RAP3Q96JB5 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.24□□□□□ -1.73
CDK5RAP3Q96JB5 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.24□□□□□ -1.73
CDK5RAP3Q96JB5 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 RNU6-511P-201ENST00000363496 107 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 RNU6-1097P-201ENST00000363586 107 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 RNA5SP424-201ENST00000390988 115 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AC079781.2-201ENST00000446424 169 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 RPL23AP20-201ENST00000447965 421 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 FGF7P6-202ENST00000451282 293 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AL049830.2-201ENST00000480072 201 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 BTF3L4P4-201ENST00000506381 449 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 RNA5SP468-201ENST00000516782 93 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 RNA5SP143-201ENST00000516936 115 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AC008489.1-201ENST00000524271 483 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AP003072.2-201ENST00000527756 676 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AC234778.2-201ENST00000566241 354 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 FAM60BP-201ENST00000578364 658 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 MIR5685-201ENST00000579080 79 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AC105224.1-201ENST00000587055 421 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AF038458.1-201ENST00000588406 262 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AC025449.1-201ENST00000603896 529 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 SNORA62.6-201ENST00000606322 83 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AC004067.1-201ENST00000608733 700 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AC068831.8-201ENST00000620171 435 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AC244100.1-202ENST00000621554 382 ntBASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
CDK5RAP3Q96JB5 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 RNU6-1090P-201ENST00000364065 94 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 Y_RNA.256-201ENST00000364594 104 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 SNORA23-201ENST00000365128 182 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 Y_RNA.453-201ENST00000384223 109 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 RNU1-89P-201ENST00000384592 164 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 MIR1-2-201ENST00000384961 85 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 RPL32P23-201ENST00000397237 405 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 MTHFD2P2-201ENST00000407725 247 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 RNU2-9P-201ENST00000410194 145 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 RNU2-36P-201ENST00000410361 191 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 PPP1R11P2-201ENST00000423543 382 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 AL591419.1-201ENST00000427423 339 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 SNRPGP6-201ENST00000451124 220 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 RNU7-170P-201ENST00000459303 61 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 AC008481.1-201ENST00000463278 396 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 RPL7L1P8-201ENST00000469911 741 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 RNU7-51P-201ENST00000516560 62 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 NARSP2-201ENST00000518524 679 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 HMGB1P41-201ENST00000520234 440 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 AC007363.1-201ENST00000604736 620 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 AP001596.2-201ENST00000608410 312 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 AL355810.1-201ENST00000614629 552 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 WT1-AS_8.1-201ENST00000615200 275 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 MIR8058-201ENST00000615737 89 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 MIR3688-2-201ENST00000636963 87 ntBASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CDK5RAP3Q96JB5 OTUD4P1-201ENST00000237841 3067 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms