Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.45□□□□□ -1.54
NPAS3Q8IXF0 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 AL034549.2-201ENST00000618285 3373 ntBASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 RN7SKP185-201ENST00000362813 326 ntBASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 MIR521-1-201ENST00000384902 87 ntBASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 AC092573.2-201ENST00000434546 243 ntBASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 CYCSP43-201ENST00000438233 310 ntBASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 AC009220.1-201ENST00000451614 275 ntBASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 SNORD121B-201ENST00000458838 81 ntBASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 U8.22-201ENST00000459141 133 ntBASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 AC006463.2-201ENST00000473326 348 ntBASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 AC008033.2-201ENST00000542626 177 ntBASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
NPAS3Q8IXF0 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 MIR539-201ENST00000365690 78 ntBASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 MIR141-201ENST00000384975 95 ntBASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 AL357139.1-201ENST00000407792 426 ntBASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 EBAG9P1-201ENST00000418955 543 ntBASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 OOSP1P1-201ENST00000423265 274 ntBASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 AL591704.1-201ENST00000432574 275 ntBASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 IFNA11P-201ENST00000446352 526 ntBASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 AC135721.1-201ENST00000497954 479 ntBASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 AC091912.1-201ENST00000511351 248 ntBASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 RN7SKP260-201ENST00000516907 149 ntBASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 RN7SKP96-201ENST00000516948 297 ntBASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 SCARNA20.4-201ENST00000516969 131 ntBASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 BNIP3P1-201ENST00000547295 580 ntBASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 AC115085.1-201ENST00000588924 229 ntBASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
NPAS3Q8IXF0 AL360270.2-201ENST00000562952 5985 ntBASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 Y_RNA.262-201ENST00000364641 102 ntBASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 RNU6-926P-201ENST00000384075 107 ntBASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 Y_RNA.480-201ENST00000384364 102 ntBASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 Y_RNA.571-201ENST00000384753 98 ntBASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 MIR190B-201ENST00000401119 79 ntBASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 AL034379.1-201ENST00000423216 253 ntBASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 AC073465.2-201ENST00000440938 498 ntBASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 KNOP1P3-201ENST00000446933 426 ntBASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 AC007395.1-201ENST00000451333 677 ntBASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 RN7SL738P-201ENST00000470264 297 ntBASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 AC091959.1-201ENST00000495857 238 ntBASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 CASP1P1-201ENST00000526345 212 ntBASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 AC021006.3-201ENST00000530771 192 ntBASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms