Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 MTCO3P44-201ENST00000510977 541 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 AC010625.1-201ENST00000511296 403 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 RNU6-113P-201ENST00000516653 101 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 RNU1-92P-201ENST00000517017 135 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 AC087373.1-201ENST00000524920 491 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 SETP2-201ENST00000553886 926 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 MIR373-201ENST00000362273 69 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 SNORD114-27-201ENST00000363766 70 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 SNORA18.2-201ENST00000383865 132 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 MTCYBP12-201ENST00000440559 1134 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 RPL37P25-201ENST00000507308 276 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 AC093281.2-201ENST00000510153 597 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 AC006499.2-201ENST00000513470 337 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 AC025755.1-201ENST00000521306 278 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 CBX3P2-202ENST00000583365 535 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 AC098657.3-201ENST00000620434 263 ntBASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC1.1□□□□□ -2.23
CSPG4Q6UVK1 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.09□□□□□ -2.23
CSPG4Q6UVK1 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.09□□□□□ -2.23
CSPG4Q6UVK1 SNRPEP2-201ENST00000397592 279 ntBASIC1.09□□□□□ -2.23
CSPG4Q6UVK1 RPL23AP47-201ENST00000408017 460 ntBASIC1.09□□□□□ -2.23
CSPG4Q6UVK1 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
CSPG4Q6UVK1 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC1.09□□□□□ -2.23
CSPG4Q6UVK1 snoU13.3-201ENST00000459441 104 ntBASIC1.09□□□□□ -2.23
CSPG4Q6UVK1 HMGN2P13-201ENST00000476476 274 ntBASIC1.09□□□□□ -2.23
CSPG4Q6UVK1 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.09□□□□□ -2.23
CSPG4Q6UVK1 RNU6-405P-201ENST00000516637 110 ntBASIC1.09□□□□□ -2.23
CSPG4Q6UVK1 RNU6-467P-201ENST00000517027 110 ntBASIC1.09□□□□□ -2.23
CSPG4Q6UVK1 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.09□□□□□ -2.23
CSPG4Q6UVK1 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC1.09□□□□□ -2.23
CSPG4Q6UVK1 AL138976.2-201ENST00000563989 694 ntBASIC1.09□□□□□ -2.23
CSPG4Q6UVK1 AC067838.1-201ENST00000606064 577 ntBASIC1.09□□□□□ -2.23
CSPG4Q6UVK1 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC1.09□□□□□ -2.23
CSPG4Q6UVK1 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 RNU4-52P-201ENST00000384209 138 ntBASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 Y_RNA.471-201ENST00000384312 102 ntBASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 RNU2-71P-201ENST00000411395 189 ntBASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 MTND1P23-201ENST00000416931 372 ntBASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 Z75741.2-201ENST00000417272 1167 ntBASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 VN1R108P-201ENST00000431580 830 ntBASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 AL360221.1-201ENST00000445989 335 ntBASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 AC009901.1-201ENST00000506703 541 ntBASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 AC008837.2-201ENST00000513076 418 ntBASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 RNA5SP436-201ENST00000516020 115 ntBASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 AL163153.1-201ENST00000554223 283 ntBASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 AL135786.2-201ENST00000608422 615 ntBASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 AC121761.2-201ENST00000617300 689 ntBASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC1.09□□□□□ -2.24
CSPG4Q6UVK1 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
CSPG4Q6UVK1 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.08□□□□□ -2.24
CSPG4Q6UVK1 AL589994.1-201ENST00000404962 340 ntBASIC1.08□□□□□ -2.24
CSPG4Q6UVK1 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.08□□□□□ -2.24
CSPG4Q6UVK1 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.08□□□□□ -2.24
CSPG4Q6UVK1 AIMP1P2-201ENST00000425294 312 ntBASIC1.08□□□□□ -2.24
CSPG4Q6UVK1 DYNLL1P5-201ENST00000467158 270 ntBASIC1.08□□□□□ -2.24
CSPG4Q6UVK1 MTATP6P22-201ENST00000507369 598 ntBASIC1.08□□□□□ -2.24
CSPG4Q6UVK1 RNA5SP364-201ENST00000516938 78 ntBASIC1.08□□□□□ -2.24
CSPG4Q6UVK1 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC1.08□□□□□ -2.24
CSPG4Q6UVK1 SMARCE1P4-201ENST00000523647 241 ntBASIC1.08□□□□□ -2.24
CSPG4Q6UVK1 AP005435.4-201ENST00000529514 284 ntBASIC1.08□□□□□ -2.24
CSPG4Q6UVK1 HSPE1P4-201ENST00000550617 308 ntBASIC1.08□□□□□ -2.24
CSPG4Q6UVK1 DNAJC8P1-201ENST00000554535 372 ntBASIC1.08□□□□□ -2.24
CSPG4Q6UVK1 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.08□□□□□ -2.24
CSPG4Q6UVK1 AC112191.3-201ENST00000604371 277 ntBASIC1.08□□□□□ -2.24
CSPG4Q6UVK1 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC1.08□□□□□ -2.24
CSPG4Q6UVK1 Y_RNA.294-201ENST00000364916 102 ntBASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 RFESDP1-201ENST00000422350 461 ntBASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 AC090774.1-201ENST00000435925 246 ntBASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 AL031659.1-201ENST00000447075 539 ntBASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 AC005912.1-201ENST00000495392 255 ntBASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 RN7SKP5-201ENST00000517045 272 ntBASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 AC090821.2-201ENST00000523552 176 ntBASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 SNORD39.2-201ENST00000579995 76 ntBASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 AC090425.2-201ENST00000608818 501 ntBASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 HMGB1P5-201ENST00000255320 642 ntBASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 SNORA40.6-201ENST00000391153 128 ntBASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms