Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RPL31P63-201ENST00000422565 375 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 MTATP6P4-201ENST00000427725 675 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 AC096992.1-201ENST00000459808 709 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 AC107398.1-201ENST00000486904 505 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 MTCO2P32-201ENST00000514865 403 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 AC109635.4-202ENST00000531666 412 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 AC139103.1-201ENST00000534696 1030 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.16□□□□□ -2.22
USF3Q68DE3 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
USF3Q68DE3 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC1.16□□□□□ -2.22
USF3Q68DE3 OR4G1P-201ENST00000588632 938 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.16□□□□□ -2.22
USF3Q68DE3 AC012213.4-201ENST00000606457 354 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.16□□□□□ -2.22
USF3Q68DE3 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
USF3Q68DE3 ZNF33BP1-201ENST00000452497 1834 ntBASIC1.15□□□□□ -2.22
USF3Q68DE3 SNORA14A-201ENST00000364773 135 ntBASIC1.15□□□□□ -2.23
USF3Q68DE3 AL591034.1-201ENST00000407447 340 ntBASIC1.15□□□□□ -2.23
USF3Q68DE3 MIR1285-1-201ENST00000408593 84 ntBASIC1.15□□□□□ -2.23
USF3Q68DE3 HMGB1P49-201ENST00000418882 569 ntBASIC1.15□□□□□ -2.23
USF3Q68DE3 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC1.15□□□□□ -2.23
USF3Q68DE3 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC1.15□□□□□ -2.23
USF3Q68DE3 RPL23AP33-201ENST00000442301 452 ntBASIC1.15□□□□□ -2.23
USF3Q68DE3 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC1.15□□□□□ -2.23
USF3Q68DE3 AP002345.1-201ENST00000456493 928 ntBASIC1.15□□□□□ -2.23
USF3Q68DE3 HMGN2P16-201ENST00000456802 261 ntBASIC1.15□□□□□ -2.23
USF3Q68DE3 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC1.15□□□□□ -2.23
USF3Q68DE3 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC1.15□□□□□ -2.23
USF3Q68DE3 SNORA31.24-201ENST00000517232 57 ntBASIC1.15□□□□□ -2.23
USF3Q68DE3 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.15□□□□□ -2.23
USF3Q68DE3 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC1.15□□□□□ -2.23
USF3Q68DE3 AP004607.1-201ENST00000524456 203 ntBASIC1.15□□□□□ -2.23
USF3Q68DE3 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.15□□□□□ -2.23
USF3Q68DE3 MTCO1P40-201ENST00000574371 625 ntBASIC1.15□□□□□ -2.23
USF3Q68DE3 FAM106DP-201ENST00000586416 501 ntBASIC1.15□□□□□ -2.23
USF3Q68DE3 MIR7973-1-201ENST00000614683 76 ntBASIC1.15□□□□□ -2.23
USF3Q68DE3 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
USF3Q68DE3 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC1.15□□□□□ -2.23
USF3Q68DE3 AC016769.3-201ENST00000396562 315 ntBASIC1.15□□□□□ -2.23
USF3Q68DE3 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.15□□□□□ -2.23
USF3Q68DE3 AC093716.1-201ENST00000435923 377 ntBASIC1.15□□□□□ -2.23
USF3Q68DE3 ARL5AP2-201ENST00000444698 533 ntBASIC1.15□□□□□ -2.23
USF3Q68DE3 RNU6-1223P-201ENST00000517124 104 ntBASIC1.15□□□□□ -2.23
USF3Q68DE3 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
USF3Q68DE3 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.15□□□□□ -2.23
USF3Q68DE3 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.15□□□□□ -2.23
USF3Q68DE3 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC1.15□□□□□ -2.23
USF3Q68DE3 DUXAP4-201ENST00000603046 613 ntBASIC1.15□□□□□ -2.23
USF3Q68DE3 AC020658.4-201ENST00000613987 684 ntBASIC1.15□□□□□ -2.23
USF3Q68DE3 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC1.15□□□□□ -2.23
USF3Q68DE3 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
USF3Q68DE3 DEFB109C-201ENST00000382575 264 ntBASIC1.14□□□□□ -2.23
USF3Q68DE3 DEFB109B-201ENST00000382656 264 ntBASIC1.14□□□□□ -2.23
USF3Q68DE3 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC1.14□□□□□ -2.23
USF3Q68DE3 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.14□□□□□ -2.23
USF3Q68DE3 Z96811.1-201ENST00000445880 108 ntBASIC1.14□□□□□ -2.23
USF3Q68DE3 LARP7P4-201ENST00000481075 878 ntBASIC1.14□□□□□ -2.23
USF3Q68DE3 AC009901.1-201ENST00000506703 541 ntBASIC1.14□□□□□ -2.23
USF3Q68DE3 RNU1-61P-201ENST00000516107 151 ntBASIC1.14□□□□□ -2.23
USF3Q68DE3 RNU1-92P-201ENST00000517017 135 ntBASIC1.14□□□□□ -2.23
USF3Q68DE3 AP005660.1-201ENST00000522972 293 ntBASIC1.14□□□□□ -2.23
USF3Q68DE3 CENPUP2-201ENST00000555897 1186 ntBASIC1.14□□□□□ -2.23
USF3Q68DE3 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.14□□□□□ -2.23
USF3Q68DE3 AP003117.1-201ENST00000602771 554 ntBASIC1.14□□□□□ -2.23
USF3Q68DE3 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC1.14□□□□□ -2.23
USF3Q68DE3 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
USF3Q68DE3 AC096656.1-201ENST00000623826 1364 ntBASIC1.14□□□□□ -2.23
USF3Q68DE3 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
USF3Q68DE3 SLC9B1P2-201ENST00000398120 1184 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 AL445669.1-201ENST00000426743 755 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 RPS6P15-201ENST00000431996 751 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.13□□□□□ -2.23
USF3Q68DE3 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC1.13□□□□□ -2.23
USF3Q68DE3 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC1.13□□□□□ -2.23
USF3Q68DE3 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC1.13□□□□□ -2.23
USF3Q68DE3 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
USF3Q68DE3 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC1.13□□□□□ -2.23
USF3Q68DE3 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.13□□□□□ -2.23
USF3Q68DE3 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC1.13□□□□□ -2.23
USF3Q68DE3 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.13□□□□□ -2.23
USF3Q68DE3 AL109653.1-201ENST00000603091 248 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 AC245884.12-201ENST00000615364 59 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 uc_338.12-201ENST00000616344 181 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 PVT1_3.1-201ENST00000620853 95 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
USF3Q68DE3 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.13□□□□□ -2.23
USF3Q68DE3 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.13□□□□□ -2.23
USF3Q68DE3 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC1.13□□□□□ -2.23
USF3Q68DE3 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
USF3Q68DE3 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.13□□□□□ -2.23
USF3Q68DE3 RNU1-93P-201ENST00000364704 169 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 RNU6-532P-201ENST00000384318 107 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 MIR598-201ENST00000384868 97 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 HMGN2P30-201ENST00000423237 256 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 VN1R108P-201ENST00000431580 830 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 MTCYBP29-201ENST00000436327 1006 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 HMGN2P18-201ENST00000450680 270 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 RNU1-104P-201ENST00000517280 175 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 MTATP6P3-201ENST00000581686 676 ntBASIC1.13□□□□□ -2.23
USF3Q68DE3 AC005730.3-201ENST00000583067 366 ntBASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms