Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC099677.1-201ENST00000420575 175 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS53Q5VIR6 MTCO2P11-201ENST00000431069 680 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 VDAC1P3-201ENST00000434069 851 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 MTCYBP45-201ENST00000435243 565 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 AL049734.2-201ENST00000441066 616 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 AL136380.1-201ENST00000447970 162 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 ANP32BP2-201ENST00000454525 545 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 RPL9P32-201ENST00000464118 620 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 ST13P14-201ENST00000474095 734 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 RPL23AP41-201ENST00000484754 458 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 AC007182.2-201ENST00000489251 402 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 AP001086.1-201ENST00000494882 321 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 RPL23AP55-201ENST00000498163 452 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS53Q5VIR6 AC026784.1-201ENST00000507986 352 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS53Q5VIR6 Vault.3-201ENST00000516676 95 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 AC123904.2-201ENST00000548059 300 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.28□□□□□ -1.72
VPS53Q5VIR6 MEG8-218ENST00000556720 456 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS53Q5VIR6 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC4.28□□□□□ -1.72
VPS53Q5VIR6 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS53Q5VIR6 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC4.28□□□□□ -1.72
VPS53Q5VIR6 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS53Q5VIR6 XIAPP1-201ENST00000603162 600 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 AL365503.1-201ENST00000605247 905 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 AC002553.4-201ENST00000616896 331 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 U4.6-201ENST00000621618 127 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 AC009268.2-201ENST00000621925 457 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS53Q5VIR6 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS53Q5VIR6 MTND5P33-201ENST00000571250 1450 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS53Q5VIR6 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS53Q5VIR6 AL133383.2-201ENST00000622958 2336 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
VPS53Q5VIR6 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
VPS53Q5VIR6 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS53Q5VIR6 CR848007.1-201ENST00000442354 1699 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 RNU6-1207P-201ENST00000384343 107 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 MIR200C-201ENST00000384980 68 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 RNU2-71P-201ENST00000411395 189 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS53Q5VIR6 MTCO2P19-201ENST00000427513 598 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS53Q5VIR6 AC104850.1-201ENST00000435940 476 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 AL662791.1-201ENST00000441992 928 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 NFU1P2-201ENST00000448700 469 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 RPL7P52-201ENST00000449200 742 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 MTND1P12-201ENST00000455231 147 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS53Q5VIR6 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS53Q5VIR6 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC4.27□□□□□ -1.73
VPS53Q5VIR6 AC021146.1-201ENST00000511202 716 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC4.27□□□□□ -1.73
VPS53Q5VIR6 RN7SKP18-201ENST00000516005 275 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 AC109635.3-201ENST00000529536 185 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 AC024224.1-201ENST00000538284 609 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 AK6P1-201ENST00000540219 478 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS53Q5VIR6 AC126177.3-201ENST00000551839 688 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC4.27□□□□□ -1.73
VPS53Q5VIR6 SETP2-201ENST00000553886 926 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.27□□□□□ -1.73
VPS53Q5VIR6 AL121579.1-201ENST00000555129 305 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.27□□□□□ -1.73
VPS53Q5VIR6 AP000907.4-201ENST00000604143 237 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 AL161734.1-201ENST00000609720 557 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 DUXAP9-208ENST00000622815 614 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 AC093908.1-201ENST00000623125 8092 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS53Q5VIR6 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS53Q5VIR6 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
VPS53Q5VIR6 GABPAP-201ENST00000419271 1356 ntBASIC4.27□□□□□ -1.73
VPS53Q5VIR6 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 RNU6-780P-201ENST00000391030 104 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 SNORA48.7-201ENST00000391302 135 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AC127391.1-201ENST00000411737 98 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 TRIM60P10Y-201ENST00000425589 751 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 TRIM60P8Y-201ENST00000436338 762 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 VN1R17P-201ENST00000472048 1090 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 PCBP2P3-201ENST00000509726 843 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AC105914.1-201ENST00000511798 226 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AC008549.1-201ENST00000512900 643 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AC018630.1-201ENST00000541376 925 ntBASIC4.26□□□□□ -1.73
VPS53Q5VIR6 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS53Q5VIR6 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 133.4 ms