Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
FOXF1Q12946 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
FOXF1Q12946 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC1.88□□□□□ -2.11
FOXF1Q12946 RPS7P9-201ENST00000414704 586 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC1.88□□□□□ -2.11
FOXF1Q12946 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC1.88□□□□□ -2.11
FOXF1Q12946 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC1.88□□□□□ -2.11
FOXF1Q12946 MTCO3P30-201ENST00000426425 670 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 NDUFB4P6-201ENST00000436819 366 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.88□□□□□ -2.11
FOXF1Q12946 RPL32P28-201ENST00000443577 397 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 AL591719.1-201ENST00000444669 744 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.88□□□□□ -2.11
FOXF1Q12946 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC1.88□□□□□ -2.11
FOXF1Q12946 RBM43P1-201ENST00000476891 1081 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
FOXF1Q12946 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC1.88□□□□□ -2.11
FOXF1Q12946 OR4G11P-201ENST00000492842 939 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 AC090255.1-201ENST00000495779 349 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC1.88□□□□□ -2.11
FOXF1Q12946 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC1.88□□□□□ -2.11
FOXF1Q12946 RNU6-27P-201ENST00000516146 107 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 SNORA70.16-201ENST00000516390 95 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC1.88□□□□□ -2.11
FOXF1Q12946 AC008127.2-201ENST00000549925 1075 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 SETP7-201ENST00000552169 453 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 MIR3609-201ENST00000582661 80 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 MIR5002-201ENST00000584713 97 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 AC090330.1-201ENST00000588646 764 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC1.88□□□□□ -2.11
FOXF1Q12946 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC1.88□□□□□ -2.11
FOXF1Q12946 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC1.88□□□□□ -2.11
FOXF1Q12946 AC013412.1-201ENST00000610687 192 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 AC245517.5-201ENST00000611529 162 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 AL592148.2-201ENST00000612210 372 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC1.88□□□□□ -2.11
FOXF1Q12946 AC091925.2-201ENST00000625059 256 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC1.88□□□□□ -2.11
FOXF1Q12946 AC087821.2-201ENST00000637086 450 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
FOXF1Q12946 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
FOXF1Q12946 AC010680.1-201ENST00000590024 3590 ntBASIC1.88□□□□□ -2.11
FOXF1Q12946 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
FOXF1Q12946 RNU6-301P-201ENST00000384277 107 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC1.87□□□□□ -2.11
FOXF1Q12946 AC096533.1-201ENST00000411645 353 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 AL139156.1-201ENST00000412785 841 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 AL136133.1-201ENST00000413694 376 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC1.87□□□□□ -2.11
FOXF1Q12946 MORF4L1P6-201ENST00000418771 268 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC1.87□□□□□ -2.11
FOXF1Q12946 MTCO3P1-205ENST00000422088 832 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 Z98742.2-201ENST00000431564 187 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 AC092393.1-201ENST00000439625 742 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 AL121871.1-201ENST00000443413 436 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.87□□□□□ -2.11
FOXF1Q12946 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.87□□□□□ -2.11
FOXF1Q12946 USP9YP34-201ENST00000453983 808 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 AC244505.3-201ENST00000454598 187 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC1.87□□□□□ -2.11
FOXF1Q12946 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
FOXF1Q12946 MRPL42P6-201ENST00000486397 371 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 AC006390.1-201ENST00000508068 283 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
FOXF1Q12946 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC1.87□□□□□ -2.11
FOXF1Q12946 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC1.87□□□□□ -2.11
FOXF1Q12946 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC1.87□□□□□ -2.11
FOXF1Q12946 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC1.87□□□□□ -2.11
FOXF1Q12946 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.87□□□□□ -2.11
FOXF1Q12946 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC1.87□□□□□ -2.11
FOXF1Q12946 AP000867.2-201ENST00000532468 320 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 MGST1-215ENST00000540056 546 ntTSL 3 BASIC1.87□□□□□ -2.11
FOXF1Q12946 AC125611.1-201ENST00000549563 229 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 HMGB1P14-201ENST00000557424 591 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 AC011260.1-201ENST00000578420 472 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 BNIP3P24-201ENST00000593398 557 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC1.87□□□□□ -2.11
FOXF1Q12946 AC068313.1-201ENST00000604028 1008 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 AL121917.1-203ENST00000605534 577 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 AP002802.2-201ENST00000605877 235 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 AL136981.2-201ENST00000617319 734 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 AL356585.4-201ENST00000623078 1229 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 AL356266.1-201ENST00000623311 483 ntBASIC1.87□□□□□ -2.11
FOXF1Q12946 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC1.87□□□□□ -2.11
FOXF1Q12946 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
FOXF1Q12946 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.86□□□□□ -2.11
FOXF1Q12946 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
FOXF1Q12946 AC104454.1-201ENST00000421341 1401 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.86□□□□□ -2.11
FOXF1Q12946 UBE2Q2P1-202ENST00000354771 883 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 SNORA63.3-201ENST00000362682 132 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 SNORA70B-201ENST00000384210 135 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 RNU6-1300P-201ENST00000391046 108 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 AC016769.3-201ENST00000396562 315 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 AL079342.2-201ENST00000403367 482 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 RPL7P27-201ENST00000403775 720 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 MIR1290-201ENST00000408735 78 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 RNU2-28P-201ENST00000410457 189 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 RNA5SP338-201ENST00000410495 85 ntBASIC1.86□□□□□ -2.11
FOXF1Q12946 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms