Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AP002088.1-201ENST00000382740 395 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 Y_RNA.453-201ENST00000384223 109 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 RNU6-882P-201ENST00000391025 103 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 RPS26P8-201ENST00000393490 348 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 RPL21P24-201ENST00000413752 448 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXA1P49639 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC3.15□□□□□ -1.91
HOXA1P49639 MTND4LP11-201ENST00000422184 280 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 MTCO1P20-201ENST00000425366 358 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXA1P49639 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXA1P49639 GPR143P-201ENST00000434155 205 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 BX679664.1-201ENST00000434429 253 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 AC090774.1-201ENST00000435925 246 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 RPL7P54-201ENST00000438336 674 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXA1P49639 AC093156.1-201ENST00000440382 670 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 MTCO2P3-201ENST00000442543 421 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 MTND4P18-201ENST00000447010 465 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 GAPDHP27-201ENST00000447427 1020 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXA1P49639 AL162389.1-201ENST00000449233 177 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 AC140076.1-201ENST00000449897 361 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXA1P49639 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXA1P49639 MTND2P24-201ENST00000453434 806 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 MTND1P9-201ENST00000453775 944 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 UQCRHP4-201ENST00000471686 272 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 AL132838.2-201ENST00000492041 314 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 AC079382.1-201ENST00000493346 557 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXA1P49639 AC093663.1-201ENST00000497190 394 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 HMGB1P22-201ENST00000505315 124 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXA1P49639 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXA1P49639 AC103783.1-201ENST00000520506 373 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 AC103843.2-201ENST00000530523 682 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXA1P49639 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXA1P49639 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.15□□□□□ -1.91
HOXA1P49639 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.15□□□□□ -1.91
HOXA1P49639 AC128657.1-201ENST00000549459 145 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXA1P49639 AL163153.1-201ENST00000554223 283 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 AC068831.4-201ENST00000556118 109 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXA1P49639 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXA1P49639 AC034105.3-201ENST00000565294 442 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXA1P49639 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXA1P49639 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HOXA1P49639 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXA1P49639 AC004067.1-201ENST00000608733 700 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 TUG1_2.1-201ENST00000614234 87 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 AL356321.1-201ENST00000621360 228 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 AL161637.1-201ENST00000622380 412 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.15□□□□□ -1.91
HOXA1P49639 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXA1P49639 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HOXA1P49639 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXA1P49639 MTND5P7-201ENST00000413558 1798 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXA1P49639 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXA1P49639 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXA1P49639 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXA1P49639 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.14□□□□□ -1.91
HOXA1P49639 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.14□□□□□ -1.91
HOXA1P49639 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXA1P49639 Y_RNA.38-201ENST00000362617 102 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 RNA5SP399-201ENST00000364003 117 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 RN7SKP280-201ENST00000364196 304 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 U3.11-201ENST00000364476 212 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 RNU6-74P-201ENST00000384235 107 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 RNU6-754P-201ENST00000391166 107 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 AL109755.1-201ENST00000401791 649 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 CIR1P3-201ENST00000405137 479 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 RNU4-65P-201ENST00000410473 140 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 RNU2-62P-201ENST00000410868 191 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 AC126124.2-201ENST00000413542 321 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA1P49639 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXA1P49639 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXA1P49639 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA1P49639 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXA1P49639 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.14□□□□□ -1.91
HOXA1P49639 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.14□□□□□ -1.91
HOXA1P49639 MTATP6P30-201ENST00000443540 664 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA1P49639 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA1P49639 FDX1P2-201ENST00000450769 375 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 FGF7P6-202ENST00000451282 293 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA1P49639 AC008481.1-201ENST00000463278 396 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXA1P49639 AC010631.1-201ENST00000474150 156 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 VN1R105P-201ENST00000486595 910 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 RN7SL283P-201ENST00000489055 303 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 MTAPP1-201ENST00000489154 819 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 RPS27AP13-201ENST00000498403 237 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms