Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MIR6840-201ENST00000611937 71 ntBASIC2.06□□□□□ -2.08
CUX1P39880 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC2.06□□□□□ -2.08
CUX1P39880 AP000676.4-201ENST00000624659 623 ntBASIC2.06□□□□□ -2.08
CUX1P39880 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.06□□□□□ -2.08
CUX1P39880 AC007098.1-201ENST00000420122 367 ntBASIC2.05□□□□□ -2.08
CUX1P39880 RPL35AP22-201ENST00000436855 335 ntBASIC2.05□□□□□ -2.08
CUX1P39880 AL136380.1-201ENST00000447970 162 ntBASIC2.05□□□□□ -2.08
CUX1P39880 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.05□□□□□ -2.08
CUX1P39880 snoU13.3-201ENST00000459441 104 ntBASIC2.05□□□□□ -2.08
CUX1P39880 SUMO2P6-201ENST00000505273 288 ntBASIC2.05□□□□□ -2.08
CUX1P39880 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC2.05□□□□□ -2.08
CUX1P39880 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC2.05□□□□□ -2.08
CUX1P39880 MIR3690-201ENST00000580266 75 ntBASIC2.05□□□□□ -2.08
CUX1P39880 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
CUX1P39880 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.04□□□□□ -2.08
CUX1P39880 MIR92A2-201ENST00000385299 75 ntBASIC2.04□□□□□ -2.08
CUX1P39880 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC2.04□□□□□ -2.08
CUX1P39880 HSFY3P-201ENST00000444242 1191 ntBASIC2.04□□□□□ -2.08
CUX1P39880 HMGN2P16-201ENST00000456802 261 ntBASIC2.04□□□□□ -2.08
CUX1P39880 RPL21P103-201ENST00000479921 488 ntBASIC2.04□□□□□ -2.08
CUX1P39880 FO393415.2-201ENST00000480085 343 ntBASIC2.04□□□□□ -2.08
CUX1P39880 IGLVVI-22-1-201ENST00000521183 211 ntBASIC2.04□□□□□ -2.08
CUX1P39880 OR4R1P-201ENST00000529879 463 ntBASIC2.04□□□□□ -2.08
CUX1P39880 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
CUX1P39880 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.03□□□□□ -2.08
CUX1P39880 RPS3AP44-201ENST00000425466 790 ntBASIC2.03□□□□□ -2.08
CUX1P39880 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC2.03□□□□□ -2.08
CUX1P39880 IFNA20P-201ENST00000436840 528 ntBASIC2.03□□□□□ -2.08
CUX1P39880 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.03□□□□□ -2.08
CUX1P39880 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.03□□□□□ -2.08
CUX1P39880 RPS23P3-201ENST00000470993 430 ntBASIC2.03□□□□□ -2.08
CUX1P39880 RPL7P18-201ENST00000478965 734 ntBASIC2.03□□□□□ -2.08
CUX1P39880 LDHBP3-201ENST00000514909 822 ntBASIC2.03□□□□□ -2.08
CUX1P39880 RN7SKP265-201ENST00000516448 223 ntBASIC2.03□□□□□ -2.08
CUX1P39880 AC125611.2-201ENST00000551907 647 ntBASIC2.03□□□□□ -2.08
CUX1P39880 RN7SL793P-201ENST00000583259 296 ntBASIC2.03□□□□□ -2.08
CUX1P39880 AC130650.2-201ENST00000618736 2403 ntBASIC2.03□□□□□ -2.09
CUX1P39880 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
CUX1P39880 RPL31P52-201ENST00000407532 367 ntBASIC2.02□□□□□ -2.09
CUX1P39880 RN7SKP51-201ENST00000410781 304 ntBASIC2.02□□□□□ -2.09
CUX1P39880 MTCYBP12-201ENST00000440559 1134 ntBASIC2.02□□□□□ -2.09
CUX1P39880 AC005297.2-201ENST00000450430 606 ntBASIC2.02□□□□□ -2.09
CUX1P39880 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.02□□□□□ -2.09
CUX1P39880 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.02□□□□□ -2.09
CUX1P39880 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC2.02□□□□□ -2.09
CUX1P39880 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
CUX1P39880 SNORA67.1-201ENST00000364749 141 ntBASIC2.01□□□□□ -2.09
CUX1P39880 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC2.01□□□□□ -2.09
CUX1P39880 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC2.01□□□□□ -2.09
CUX1P39880 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC2.01□□□□□ -2.09
CUX1P39880 RNU6-1218P-201ENST00000458990 108 ntBASIC2.01□□□□□ -2.09
CUX1P39880 NPM1P52-201ENST00000518264 846 ntBASIC2.01□□□□□ -2.09
CUX1P39880 AC090821.2-201ENST00000523552 176 ntBASIC2.01□□□□□ -2.09
CUX1P39880 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC2.01□□□□□ -2.09
CUX1P39880 AL121821.2-201ENST00000556081 394 ntBASIC2.01□□□□□ -2.09
CUX1P39880 RNA5SP108-201ENST00000605921 117 ntBASIC2.01□□□□□ -2.09
CUX1P39880 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC2.01□□□□□ -2.09
CUX1P39880 MKKS-204ENST00000639674 192 ntBASIC2.01□□□□□ -2.09
CUX1P39880 SLC10A5P1-201ENST00000379063 1306 ntBASIC2.01□□□□□ -2.09
CUX1P39880 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.01□□□□□ -2.09
CUX1P39880 RNU1-139P-201ENST00000391307 165 ntBASIC2.01□□□□□ -2.09
CUX1P39880 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC2.01□□□□□ -2.09
CUX1P39880 BMI1P1-201ENST00000445879 941 ntBASIC2.01□□□□□ -2.09
CUX1P39880 RFC5P1-201ENST00000454419 874 ntBASIC2.01□□□□□ -2.09
CUX1P39880 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.01□□□□□ -2.09
CUX1P39880 AC009901.1-201ENST00000506703 541 ntBASIC2.01□□□□□ -2.09
CUX1P39880 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2.01□□□□□ -2.09
CUX1P39880 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.01□□□□□ -2.09
CUX1P39880 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC2.01□□□□□ -2.09
CUX1P39880 AP005137.2-201ENST00000609238 400 ntBASIC2.01□□□□□ -2.09
CUX1P39880 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC2□□□□□ -2.09
CUX1P39880 RNU6-234P-201ENST00000365229 104 ntBASIC2□□□□□ -2.09
CUX1P39880 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC2□□□□□ -2.09
CUX1P39880 AL022400.1-201ENST00000423946 935 ntBASIC2□□□□□ -2.09
CUX1P39880 AC005534.2-201ENST00000431047 433 ntBASIC2□□□□□ -2.09
CUX1P39880 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2□□□□□ -2.09
CUX1P39880 AC093801.2-201ENST00000503966 1050 ntBASIC2□□□□□ -2.09
CUX1P39880 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC2□□□□□ -2.09
CUX1P39880 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC2□□□□□ -2.09
CUX1P39880 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2□□□□□ -2.09
CUX1P39880 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2□□□□□ -2.09
CUX1P39880 MTND2P17-201ENST00000550281 688 ntBASIC2□□□□□ -2.09
CUX1P39880 DNAJC8P1-201ENST00000554535 372 ntBASIC2□□□□□ -2.09
CUX1P39880 AC245036.5-201ENST00000596330 847 ntBASIC2□□□□□ -2.09
CUX1P39880 MIR98-201ENST00000606724 119 ntBASIC2□□□□□ -2.09
CUX1P39880 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2□□□□□ -2.09
CUX1P39880 AC098657.3-201ENST00000620434 263 ntBASIC2□□□□□ -2.09
CUX1P39880 PABPC1P7-201ENST00000413177 1513 ntBASIC1.99□□□□□ -2.09
CUX1P39880 MIR373-201ENST00000362273 69 ntBASIC1.99□□□□□ -2.09
CUX1P39880 MIR758-201ENST00000390227 88 ntBASIC1.99□□□□□ -2.09
CUX1P39880 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC1.99□□□□□ -2.09
CUX1P39880 AC074117.2-201ENST00000417130 397 ntBASIC1.99□□□□□ -2.09
CUX1P39880 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC1.99□□□□□ -2.09
CUX1P39880 AC023790.1-201ENST00000482174 347 ntBASIC1.99□□□□□ -2.09
CUX1P39880 AC092902.1-201ENST00000486999 259 ntBASIC1.99□□□□□ -2.09
CUX1P39880 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
CUX1P39880 LLPHP1-201ENST00000603571 367 ntBASIC1.99□□□□□ -2.09
CUX1P39880 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC1.99□□□□□ -2.09
CUX1P39880 AC008133.2-201ENST00000624540 351 ntBASIC1.99□□□□□ -2.09
CUX1P39880 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms