Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC113155.1-201ENST00000511141 769 ntBASIC1.19□□□□□ -2.22
VCANP13611 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC1.19□□□□□ -2.22
VCANP13611 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC1.19□□□□□ -2.22
VCANP13611 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC1.19□□□□□ -2.22
VCANP13611 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC1.19□□□□□ -2.22
VCANP13611 AL590233.1-201ENST00000430017 456 ntBASIC1.19□□□□□ -2.22
VCANP13611 AC244035.1-201ENST00000430042 390 ntBASIC1.19□□□□□ -2.22
VCANP13611 ZNF965P-201ENST00000432501 817 ntBASIC1.19□□□□□ -2.22
VCANP13611 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC1.19□□□□□ -2.22
VCANP13611 AL132857.1-201ENST00000555180 708 ntBASIC1.19□□□□□ -2.22
VCANP13611 SNORA68.2-201ENST00000391263 128 ntBASIC1.18□□□□□ -2.22
VCANP13611 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.18□□□□□ -2.22
VCANP13611 AC233266.2-201ENST00000567067 528 ntBASIC1.18□□□□□ -2.22
VCANP13611 AC004808.1-201ENST00000627671 721 ntBASIC1.18□□□□□ -2.22
VCANP13611 AC091152.2-201ENST00000591628 2569 ntBASIC1.18□□□□□ -2.22
VCANP13611 UBE2V1P13-201ENST00000436983 439 ntBASIC1.18□□□□□ -2.22
VCANP13611 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC1.18□□□□□ -2.22
VCANP13611 AC010200.2-201ENST00000605098 235 ntBASIC1.18□□□□□ -2.22
VCANP13611 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC1.17□□□□□ -2.22
VCANP13611 AC234775.1-201ENST00000454247 670 ntBASIC1.17□□□□□ -2.22
VCANP13611 RPL31P58-201ENST00000469001 379 ntBASIC1.17□□□□□ -2.22
VCANP13611 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC1.17□□□□□ -2.22
VCANP13611 MTCYBP19-201ENST00000517463 1124 ntBASIC1.17□□□□□ -2.22
VCANP13611 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC1.17□□□□□ -2.22
VCANP13611 OR6C7P-201ENST00000547875 934 ntBASIC1.17□□□□□ -2.22
VCANP13611 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC1.17□□□□□ -2.22
VCANP13611 MOB4-205ENST00000409916 829 ntTSL 3 BASIC1.17□□□□□ -2.22
VCANP13611 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.17□□□□□ -2.22
VCANP13611 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC1.17□□□□□ -2.22
VCANP13611 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.17□□□□□ -2.22
VCANP13611 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC1.17□□□□□ -2.22
VCANP13611 SNORA50A-202ENST00000629536 136 ntBASIC1.17□□□□□ -2.22
VCANP13611 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
VCANP13611 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC1.17□□□□□ -2.22
VCANP13611 Z99497.1-201ENST00000421282 135 ntBASIC1.17□□□□□ -2.22
VCANP13611 MTCO2P9-201ENST00000503214 694 ntBASIC1.17□□□□□ -2.22
VCANP13611 MIR4714-201ENST00000580728 77 ntBASIC1.17□□□□□ -2.22
VCANP13611 AC006338.1-201ENST00000618453 749 ntBASIC1.17□□□□□ -2.22
VCANP13611 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC1.16□□□□□ -2.22
VCANP13611 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC1.16□□□□□ -2.22
VCANP13611 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC1.16□□□□□ -2.22
VCANP13611 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.16□□□□□ -2.22
VCANP13611 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.16□□□□□ -2.22
VCANP13611 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
VCANP13611 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
VCANP13611 RNU6ATAC4P-201ENST00000387446 126 ntBASIC1.16□□□□□ -2.22
VCANP13611 RNA5SP193-201ENST00000410353 107 ntBASIC1.16□□□□□ -2.22
VCANP13611 AC146507.1-201ENST00000468335 354 ntBASIC1.16□□□□□ -2.22
VCANP13611 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC1.16□□□□□ -2.22
VCANP13611 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
VCANP13611 AP000254.1-201ENST00000609934 520 ntBASIC1.16□□□□□ -2.22
VCANP13611 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.16□□□□□ -2.22
VCANP13611 SUMO2P12-201ENST00000405924 140 ntBASIC1.16□□□□□ -2.22
VCANP13611 AC019070.1-201ENST00000415008 1024 ntBASIC1.16□□□□□ -2.22
VCANP13611 AC103833.1-201ENST00000517442 172 ntBASIC1.16□□□□□ -2.22
VCANP13611 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC1.16□□□□□ -2.22
VCANP13611 AC123912.5-201ENST00000605470 343 ntBASIC1.16□□□□□ -2.22
VCANP13611 AP002907.1-201ENST00000606361 1430 ntBASIC1.15□□□□□ -2.22
VCANP13611 RNU6-984P-201ENST00000363236 109 ntBASIC1.15□□□□□ -2.22
VCANP13611 Y_RNA.488-201ENST00000384403 102 ntBASIC1.15□□□□□ -2.22
VCANP13611 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC1.15□□□□□ -2.22
VCANP13611 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC1.15□□□□□ -2.22
VCANP13611 AC126177.8-201ENST00000618339 1015 ntBASIC1.15□□□□□ -2.22
VCANP13611 uc_338.20-201ENST00000621563 178 ntBASIC1.15□□□□□ -2.22
VCANP13611 AC008669.1-201ENST00000565823 2178 ntBASIC1.15□□□□□ -2.23
VCANP13611 ICE2P2-201ENST00000483823 2787 ntBASIC1.15□□□□□ -2.23
VCANP13611 MIR936-201ENST00000401264 98 ntBASIC1.15□□□□□ -2.23
VCANP13611 MIR1265-201ENST00000408444 86 ntBASIC1.15□□□□□ -2.23
VCANP13611 AL357078.2-201ENST00000416486 427 ntBASIC1.15□□□□□ -2.23
VCANP13611 HMGN2P38-201ENST00000423806 265 ntBASIC1.15□□□□□ -2.23
VCANP13611 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC1.15□□□□□ -2.23
VCANP13611 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.15□□□□□ -2.23
VCANP13611 NAA50-206ENST00000493454 964 ntTSL 2 BASIC1.15□□□□□ -2.23
VCANP13611 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.23
VCANP13611 AC130650.2-201ENST00000618736 2403 ntBASIC1.15□□□□□ -2.23
VCANP13611 AC004941.2-201ENST00000427009 228 ntBASIC1.14□□□□□ -2.23
VCANP13611 HMGB3P21-201ENST00000452483 547 ntBASIC1.14□□□□□ -2.23
VCANP13611 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC1.14□□□□□ -2.23
VCANP13611 AC104472.2-201ENST00000469035 601 ntBASIC1.14□□□□□ -2.23
VCANP13611 AK3P2-201ENST00000507976 429 ntBASIC1.14□□□□□ -2.23
VCANP13611 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC1.14□□□□□ -2.23
VCANP13611 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC1.14□□□□□ -2.23
VCANP13611 AC021755.4-201ENST00000616620 456 ntBASIC1.14□□□□□ -2.23
VCANP13611 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC1.14□□□□□ -2.23
VCANP13611 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.14□□□□□ -2.23
VCANP13611 AC087343.1-201ENST00000477341 475 ntBASIC1.14□□□□□ -2.23
VCANP13611 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC1.14□□□□□ -2.23
VCANP13611 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC1.14□□□□□ -2.23
VCANP13611 MIR4295-201ENST00000585286 85 ntBASIC1.14□□□□□ -2.23
VCANP13611 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.14□□□□□ -2.23
VCANP13611 HMGB3P31-201ENST00000413333 595 ntBASIC1.14□□□□□ -2.23
VCANP13611 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
VCANP13611 AC093801.2-201ENST00000503966 1050 ntBASIC1.14□□□□□ -2.23
VCANP13611 AP004247.1-201ENST00000531556 1289 ntBASIC1.14□□□□□ -2.23
VCANP13611 MTCO1P40-201ENST00000574371 625 ntBASIC1.14□□□□□ -2.23
VCANP13611 MAGOH2P-202ENST00000584384 429 ntBASIC1.14□□□□□ -2.23
VCANP13611 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
VCANP13611 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC1.13□□□□□ -2.23
VCANP13611 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.13□□□□□ -2.23
VCANP13611 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms