Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 PTMAP5-201ENST00000393073 333 ntBASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 RPS4XP8-201ENST00000402039 771 ntBASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 AL590002.1-201ENST00000406554 418 ntBASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 HSPE1P12-201ENST00000412576 301 ntBASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 AC114491.1-201ENST00000416095 246 ntBASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 AL356535.1-201ENST00000440335 398 ntBASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 DDX3P2-201ENST00000446138 111 ntBASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 AC093899.1-201ENST00000457984 376 ntBASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 MRPS17P3-201ENST00000465453 385 ntBASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 AC022690.1-201ENST00000526681 550 ntBASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 OR5AL2P-201ENST00000532185 920 ntBASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 AC034105.3-201ENST00000565294 442 ntBASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 AC009570.1-201ENST00000609599 745 ntBASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 MTCO1P12-201ENST00000414273 1543 ntBASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 RNU6-213P-201ENST00000384051 104 ntBASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 RNU6ATAC25P-201ENST00000408798 117 ntBASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 RNU2-33P-201ENST00000410344 192 ntBASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 OR51A5P-201ENST00000415429 942 ntBASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 PIGFP3-201ENST00000441918 722 ntBASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 RNA5SP246-201ENST00000458909 119 ntBASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 RNU7-182P-201ENST00000459009 62 ntBASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 AC006512.1-201ENST00000468816 291 ntBASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 AL160314.1-201ENST00000490836 438 ntBASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 OR5B19P-201ENST00000531766 928 ntBASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 AC027807.1-201ENST00000559921 996 ntBASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 AC092954.2-201ENST00000609103 430 ntBASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 AC107294.1-201ENST00000609524 467 ntBASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 AL390240.1-201ENST00000612950 384 ntBASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 U6atac.1-201ENST00000616025 117 ntBASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 AC002076.2-201ENST00000617362 122 ntBASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 AC091905.2-201ENST00000623143 306 ntBASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 AC008013.2-202ENST00000637965 364 ntBASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC9Q9Y3X0 MTND5P1-201ENST00000445440 1375 ntBASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 OTUD4P1-201ENST00000237841 3067 ntBASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 RNU1-83P-201ENST00000363426 164 ntBASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 Y_RNA.372-201ENST00000365599 102 ntBASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 AL353193.1-201ENST00000421444 268 ntBASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 FTH1P25-201ENST00000447665 469 ntBASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 MIR5195-201ENST00000583555 115 ntBASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 AC010591.1-201ENST00000603941 649 ntBASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 Z98200.1-201ENST00000607298 470 ntBASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 MTND5P42-201ENST00000637720 498 ntBASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 TPTE2P4-201ENST00000258589 1605 ntBASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC9Q9Y3X0 FAM35BP-202ENST00000497389 3337 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 API5P2-201ENST00000397055 1498 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 UBE2L2-201ENST00000254302 429 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 OR4G2P-201ENST00000328113 903 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 RNU6-1167P-201ENST00000363227 94 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 RNU6-14P-201ENST00000384630 106 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 RNU6-387P-201ENST00000411331 105 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 UBE2V1P10-201ENST00000414685 269 ntBASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms