Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 VN1R34P-201ENST00000447387 883 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 AC007537.2-201ENST00000472093 511 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 RNU6-1281P-201ENST00000516223 105 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 Y_RNA.704-201ENST00000516851 102 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 AC012182.1-201ENST00000570133 895 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 AL034351.1-201ENST00000605288 668 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 AP001596.2-201ENST00000608410 312 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 RDM1-219ENST00000615378 542 ntTSL 3 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 AC099654.14-201ENST00000638599 341 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 AL732372.2-225ENST00000642124 456 ntBASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.35□□□□□ -1.71
LIMCH1Q9UPQ0 Y_RNA.89-201ENST00000363031 102 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 RNU6-1090P-201ENST00000364065 94 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 SNORD3H-201ENST00000384486 214 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 FGF7P8-201ENST00000402994 292 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 RHEBP3-201ENST00000411920 351 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 RPS20P5-201ENST00000434808 360 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 CALM1P1-201ENST00000442082 433 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 RPS29P31-201ENST00000446147 164 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 NFU1P2-201ENST00000448700 469 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 SNORD97-201ENST00000459187 142 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 RNU6-261P-201ENST00000459506 102 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 AC083798.1-201ENST00000472671 131 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 RPS27AP1-201ENST00000475545 471 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 RPS15AP36-201ENST00000492022 382 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 RNU6-64P-201ENST00000517119 105 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 RNU6-1220P-201ENST00000517126 108 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 MTND1P35-201ENST00000526739 508 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 AC008752.3-201ENST00000588113 712 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 NRBF2P5-201ENST00000603087 788 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 AC025449.1-201ENST00000603896 529 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 RNU1-30P-201ENST00000606575 163 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 AC008536.2-201ENST00000607284 349 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 AC093788.1-201ENST00000609356 927 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 AC083809.1-201ENST00000615051 472 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 AC243312.2-201ENST00000623340 601 ntBASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LIMCH1Q9UPQ0 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
LIMCH1Q9UPQ0 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.34□□□□□ -1.72
LIMCH1Q9UPQ0 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
LIMCH1Q9UPQ0 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 RPS4XP5-202ENST00000449995 1334 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 RNU6-1284P-201ENST00000363701 100 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 RNA5SP42-201ENST00000364278 115 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 Y_RNA.295-201ENST00000364918 102 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 RNU6-74P-201ENST00000384235 107 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 RNU6-606P-201ENST00000384721 111 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 MIR30B-201ENST00000384850 88 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 RN7SKP159-201ENST00000410657 292 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 RPL30P2-201ENST00000414021 291 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 UBE2FP1-201ENST00000416536 447 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 ZNF90P2-204ENST00000419323 1075 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 AC006989.1-201ENST00000427212 131 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 AL591419.1-201ENST00000427423 339 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 OR2AS1P-201ENST00000427827 319 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 RPL23AP30-201ENST00000432419 501 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 TPT1P12-201ENST00000448968 492 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 AL162389.1-201ENST00000449233 177 ntBASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC4.33□□□□□ -1.72
LIMCH1Q9UPQ0 AC106872.2-201ENST00000494303 480 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms