Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AL359385.1-201ENST00000456509 365 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 RPL9P33-201ENST00000484311 566 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 MTCYBP43-201ENST00000513621 740 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 SNORA31.21-201ENST00000517180 77 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 MTND1P24-201ENST00000552175 861 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AC009097.3-201ENST00000563557 1018 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AL353997.4-201ENST00000586196 166 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AP001429.1-201ENST00000602568 530 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AC011451.2-201ENST00000604303 598 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AC002550.2-201ENST00000621246 394 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AC090617.7-201ENST00000623952 126 ntBASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.08□□□□□ -1.92
VPS54Q9P1Q0 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 DEFB108F-201ENST00000344638 222 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 RNU6-7-201ENST00000364784 107 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 RNU6-8-201ENST00000365467 107 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 MTND4P13-201ENST00000402078 1023 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AL031121.1-201ENST00000406553 254 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 RPS3AP24-201ENST00000407896 734 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 CCDC58P2-201ENST00000417131 366 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 SNRPEP7-201ENST00000438350 220 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 RPL26P6-201ENST00000440913 438 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 SNORD109B-201ENST00000458961 67 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 SNORD109A-201ENST00000459128 67 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 RPL31P60-201ENST00000478450 367 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 RN7SL297P-201ENST00000483161 293 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AC147055.4-201ENST00000504399 745 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AC034244.1-201ENST00000507687 207 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 HSPE1P23-201ENST00000509838 286 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AC109464.2-201ENST00000510242 943 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AC024589.1-201ENST00000512207 263 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 RN7SKP265-201ENST00000516448 223 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AC105185.1-201ENST00000518705 535 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 DEFB108D-201ENST00000527787 222 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AL355836.1-201ENST00000555951 870 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 AC025588.2-201ENST00000604851 466 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 MTND5P7-201ENST00000413558 1798 ntBASIC3.07□□□□□ -1.92
VPS54Q9P1Q0 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 RNU6-97P-201ENST00000363387 104 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 RNU4-28P-201ENST00000364739 141 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 RNU6-744P-201ENST00000365557 107 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 RNU6-1316P-201ENST00000384242 108 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AL356421.1-201ENST00000403255 413 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 MIR320C1-201ENST00000408566 88 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 RNA5SP344-201ENST00000411081 104 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 RPL22P18-201ENST00000417197 377 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 MTCO2P17-201ENST00000424336 677 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AC104332.2-201ENST00000429959 156 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 LSM1P1-201ENST00000438629 273 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 MTCO1P27-201ENST00000448269 226 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 CACYBPP2-201ENST00000453625 678 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 SNORD121B-201ENST00000458838 81 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AP001486.1-201ENST00000463339 476 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AC104563.1-201ENST00000476147 376 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms