Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 RNU6-883P-201ENST00000384597 107 ntBASIC2.53□□□□□ -2
USP42Q9H9J4 BX682237.1-201ENST00000415016 335 ntBASIC2.53□□□□□ -2
USP42Q9H9J4 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC2.53□□□□□ -2
USP42Q9H9J4 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.53□□□□□ -2
USP42Q9H9J4 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.53□□□□□ -2
USP42Q9H9J4 RPL7P37-201ENST00000425095 738 ntBASIC2.53□□□□□ -2
USP42Q9H9J4 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.53□□□□□ -2
USP42Q9H9J4 AC009961.3-201ENST00000449832 765 ntBASIC2.53□□□□□ -2
USP42Q9H9J4 AC234775.1-201ENST00000454247 670 ntBASIC2.53□□□□□ -2
USP42Q9H9J4 NAP1L1P3-201ENST00000462291 880 ntBASIC2.53□□□□□ -2
USP42Q9H9J4 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC2.53□□□□□ -2
USP42Q9H9J4 AIG1P1-201ENST00000503376 148 ntBASIC2.53□□□□□ -2
USP42Q9H9J4 MTND3P24-201ENST00000506306 329 ntBASIC2.53□□□□□ -2
USP42Q9H9J4 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC2.53□□□□□ -2
USP42Q9H9J4 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC2.53□□□□□ -2
USP42Q9H9J4 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC2.53□□□□□ -2
USP42Q9H9J4 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC2.53□□□□□ -2
USP42Q9H9J4 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.53□□□□□ -2
USP42Q9H9J4 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.53□□□□□ -2
USP42Q9H9J4 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC2.53□□□□□ -2
USP42Q9H9J4 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC2.53□□□□□ -2
USP42Q9H9J4 AC091925.2-201ENST00000625059 256 ntBASIC2.53□□□□□ -2
USP42Q9H9J4 AC110079.1-202ENST00000635213 138 ntBASIC2.53□□□□□ -2
USP42Q9H9J4 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.53□□□□□ -2
USP42Q9H9J4 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2.01
USP42Q9H9J4 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.52□□□□□ -2.01
USP42Q9H9J4 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.52□□□□□ -2.01
USP42Q9H9J4 AL121978.1-201ENST00000402778 359 ntBASIC2.52□□□□□ -2.01
USP42Q9H9J4 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.52□□□□□ -2.01
USP42Q9H9J4 LUZP4P1-201ENST00000415420 344 ntBASIC2.52□□□□□ -2.01
USP42Q9H9J4 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC2.52□□□□□ -2.01
USP42Q9H9J4 TRIM60P13-201ENST00000432350 1283 ntBASIC2.52□□□□□ -2.01
USP42Q9H9J4 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC2.52□□□□□ -2.01
USP42Q9H9J4 USP9YP8-201ENST00000441913 500 ntBASIC2.52□□□□□ -2.01
USP42Q9H9J4 RPL23AP7-203ENST00000449021 469 ntBASIC2.52□□□□□ -2.01
USP42Q9H9J4 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC2.52□□□□□ -2.01
USP42Q9H9J4 RNU6-1095P-201ENST00000516148 108 ntBASIC2.52□□□□□ -2.01
USP42Q9H9J4 SNORA70.16-201ENST00000516390 95 ntBASIC2.52□□□□□ -2.01
USP42Q9H9J4 SNORA31.15-201ENST00000516771 132 ntBASIC2.52□□□□□ -2.01
USP42Q9H9J4 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.52□□□□□ -2.01
USP42Q9H9J4 AC124293.1-201ENST00000530034 493 ntBASIC2.52□□□□□ -2.01
USP42Q9H9J4 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.52□□□□□ -2.01
USP42Q9H9J4 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC2.52□□□□□ -2.01
USP42Q9H9J4 RPAP2P1-201ENST00000603626 1168 ntBASIC2.52□□□□□ -2.01
USP42Q9H9J4 KATNBL1P1-201ENST00000605192 748 ntBASIC2.52□□□□□ -2.01
USP42Q9H9J4 AL121917.1-203ENST00000605534 577 ntBASIC2.52□□□□□ -2.01
USP42Q9H9J4 snoU13.31-201ENST00000607291 104 ntBASIC2.52□□□□□ -2.01
USP42Q9H9J4 AL161734.1-201ENST00000609720 557 ntBASIC2.52□□□□□ -2.01
USP42Q9H9J4 AC034102.8-201ENST00000615146 484 ntBASIC2.52□□□□□ -2.01
USP42Q9H9J4 MFSD8-245ENST00000641743 948 ntBASIC2.52□□□□□ -2.01
USP42Q9H9J4 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.52□□□□□ -2.01
USP42Q9H9J4 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
USP42Q9H9J4 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
USP42Q9H9J4 AC026241.1-201ENST00000517873 2142 ntBASIC2.52□□□□□ -2.01
USP42Q9H9J4 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
USP42Q9H9J4 AC138915.1-201ENST00000565427 1685 ntBASIC2.51□□□□□ -2.01
USP42Q9H9J4 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.51□□□□□ -2.01
USP42Q9H9J4 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
USP42Q9H9J4 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
USP42Q9H9J4 U3.29-201ENST00000391296 212 ntBASIC2.51□□□□□ -2.01
USP42Q9H9J4 AL355615.1-201ENST00000406187 641 ntBASIC2.51□□□□□ -2.01
USP42Q9H9J4 RPL7P30-201ENST00000420888 709 ntBASIC2.51□□□□□ -2.01
USP42Q9H9J4 MORF4L1P7-201ENST00000426038 703 ntBASIC2.51□□□□□ -2.01
USP42Q9H9J4 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC2.51□□□□□ -2.01
USP42Q9H9J4 NDUFB4P6-201ENST00000436819 366 ntBASIC2.51□□□□□ -2.01
USP42Q9H9J4 CBWD4P-201ENST00000445695 655 ntBASIC2.51□□□□□ -2.01
USP42Q9H9J4 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
USP42Q9H9J4 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC2.51□□□□□ -2.01
USP42Q9H9J4 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.51□□□□□ -2.01
USP42Q9H9J4 MTCO3P2-201ENST00000457365 171 ntBASIC2.51□□□□□ -2.01
USP42Q9H9J4 RPL31P60-201ENST00000478450 367 ntBASIC2.51□□□□□ -2.01
USP42Q9H9J4 RPL23AP63-201ENST00000498752 471 ntBASIC2.51□□□□□ -2.01
USP42Q9H9J4 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
USP42Q9H9J4 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
USP42Q9H9J4 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
USP42Q9H9J4 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
USP42Q9H9J4 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.51□□□□□ -2.01
USP42Q9H9J4 ISCA1P3-201ENST00000577104 373 ntBASIC2.51□□□□□ -2.01
USP42Q9H9J4 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.51□□□□□ -2.01
USP42Q9H9J4 MIR3609-201ENST00000582661 80 ntBASIC2.51□□□□□ -2.01
USP42Q9H9J4 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC2.51□□□□□ -2.01
USP42Q9H9J4 AC010738.1-201ENST00000604970 987 ntBASIC2.51□□□□□ -2.01
USP42Q9H9J4 AL353748.2-201ENST00000622148 471 ntBASIC2.51□□□□□ -2.01
USP42Q9H9J4 AC099654.7-201ENST00000635788 2127 ntBASIC2.51□□□□□ -2.01
USP42Q9H9J4 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
USP42Q9H9J4 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.5□□□□□ -2.01
USP42Q9H9J4 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.5□□□□□ -2.01
USP42Q9H9J4 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.5□□□□□ -2.01
USP42Q9H9J4 NPM1P10-201ENST00000398310 865 ntBASIC2.5□□□□□ -2.01
USP42Q9H9J4 AL356057.2-201ENST00000403318 432 ntBASIC2.5□□□□□ -2.01
USP42Q9H9J4 AL133384.1-201ENST00000412744 351 ntBASIC2.5□□□□□ -2.01
USP42Q9H9J4 AL356320.2-201ENST00000417263 507 ntBASIC2.5□□□□□ -2.01
USP42Q9H9J4 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC2.5□□□□□ -2.01
USP42Q9H9J4 MTCO3P30-201ENST00000426425 670 ntBASIC2.5□□□□□ -2.01
USP42Q9H9J4 WARS2P1-201ENST00000429678 537 ntBASIC2.5□□□□□ -2.01
USP42Q9H9J4 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.5□□□□□ -2.01
USP42Q9H9J4 AL021397.1-201ENST00000451806 248 ntBASIC2.5□□□□□ -2.01
USP42Q9H9J4 AC025033.1-201ENST00000463883 194 ntBASIC2.5□□□□□ -2.01
USP42Q9H9J4 SETP11-201ENST00000473027 690 ntBASIC2.5□□□□□ -2.01
USP42Q9H9J4 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms