Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AL365361.1-201ENST00000566942 3481 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 MIR422A-201ENST00000362286 90 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 Y_RNA.46-201ENST00000362695 102 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 RNU4-40P-201ENST00000364351 143 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 RNU5E-5P-201ENST00000365379 116 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 MIR1302-8-201ENST00000408342 128 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 Y_RNA.608-201ENST00000410647 95 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 RPL30P2-201ENST00000414021 291 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AL353777.1-201ENST00000425552 326 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 BX890604.2-201ENST00000427883 474 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AL049734.2-201ENST00000441066 616 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 COX6CP12-201ENST00000446748 202 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AL592447.1-201ENST00000447592 540 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 MTCO1P42-201ENST00000457379 726 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 RPS3AP14-201ENST00000483907 780 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AC105914.1-201ENST00000511798 226 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 RNU6-1231P-201ENST00000517185 103 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 HMGN1P28-201ENST00000521340 364 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AC060771.1-201ENST00000582031 164 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 ABBA01006766.1-201ENST00000584728 294 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AL157817.1-201ENST00000614264 790 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AC009090.3-201ENST00000616553 565 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AC104010.1-201ENST00000616889 150 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AC092140.2-201ENST00000618027 521 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 Z69908.1-201ENST00000622603 247 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 AC025048.6-202ENST00000627667 438 ntBASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.18□□□□□ -1.9
CCDC3Q9BQI4 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 AC092326.2-201ENST00000624772 1561 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 ZNF807-201ENST00000328088 1707 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 MIR591-201ENST00000385290 95 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 SEPT2P1-201ENST00000419651 180 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 RPL21P32-201ENST00000419877 477 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 PPP1R11P2-201ENST00000423543 382 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 TXNP1-201ENST00000441872 371 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 RPL23AP31-201ENST00000456160 467 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 RN7SL863P-201ENST00000462370 296 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 RPL23AP14-201ENST00000468281 468 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 AC055855.1-201ENST00000489563 579 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 MTCO2P32-201ENST00000514865 403 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 AC090136.1-201ENST00000520009 240 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 AC022878.1-201ENST00000530684 149 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 SNRPGP16-201ENST00000533275 226 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 EIF4BP1-201ENST00000554881 351 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 MIR5697-201ENST00000578045 78 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 LARP7P3-201ENST00000579888 337 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 NBR2-204ENST00000587322 63 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 AP001029.3-201ENST00000588063 596 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 AL359999.1-201ENST00000604513 294 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 uc_338.1-201ENST00000612113 180 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 AC025594.3-201ENST00000613068 790 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 AL450472.3-201ENST00000615578 367 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 SNORD39.4-201ENST00000620099 78 ntBASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC3Q9BQI4 AC092125.1-201ENST00000562568 1995 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms