Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 RNU6-636P-201ENST00000384598 107 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 RNU6-925P-201ENST00000384629 104 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 MIR512-1-201ENST00000384913 84 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 RNU6-754P-201ENST00000391166 107 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 AL139132.1-201ENST00000431587 344 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 UBE2V1P13-201ENST00000436983 439 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 COX7BP2-201ENST00000437976 242 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 AL714022.1-201ENST00000439897 151 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 RPS24P13-201ENST00000442520 397 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 RPL37P4-201ENST00000448908 268 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 AL009048.1-201ENST00000450437 298 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 USP9YP25-201ENST00000457708 443 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 MTND4LP3-201ENST00000468320 276 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 AC116337.2-201ENST00000477662 156 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 RPL7P18-201ENST00000478965 734 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 AP001025.2-201ENST00000490908 477 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 AC119751.4-201ENST00000507498 357 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 AC093281.2-201ENST00000510153 597 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 AC034159.1-201ENST00000513885 583 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 AL133271.1-201ENST00000538229 291 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 AC034105.3-201ENST00000565294 442 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 AC090617.7-201ENST00000623952 126 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 MTND5P7-201ENST00000413558 1798 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 AL035425.3-201ENST00000564206 4996 ntBASIC3.19□□□□□ -1.9
CCDC43Q96MW1 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC43Q96MW1 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC43Q96MW1 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC43Q96MW1 MIR320C1-201ENST00000408566 88 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC43Q96MW1 MTND1P21-201ENST00000412991 285 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 RPL7P37-201ENST00000425095 738 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 AL365496.1-201ENST00000426885 215 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 SAR1AP4-201ENST00000429225 591 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC43Q96MW1 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC43Q96MW1 CBWD4P-201ENST00000445695 655 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 BMI1P1-201ENST00000445879 941 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC43Q96MW1 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.18□□□□□ -1.9
CCDC43Q96MW1 RPS27P26-201ENST00000494583 239 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC43Q96MW1 AC097462.2-201ENST00000504623 481 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 RNA5SP76-201ENST00000516277 87 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 SCARNA13-201ENST00000516672 275 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC43Q96MW1 HMGN1P28-201ENST00000521340 364 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC43Q96MW1 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC43Q96MW1 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC43Q96MW1 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC43Q96MW1 AC020895.1-201ENST00000595362 272 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 AL139344.1-201ENST00000605228 195 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 AC106052.1-201ENST00000608029 497 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 AC069234.5-201ENST00000611056 416 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 AL133445.2-201ENST00000611191 527 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC43Q96MW1 AC013476.2-201ENST00000614456 459 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC43Q96MW1 MIR6733-201ENST00000635723 61 ntBASIC3.18□□□□□ -1.9
CCDC43Q96MW1 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC43Q96MW1 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 RN7SKP140-201ENST00000411196 284 ntBASIC3.17□□□□□ -1.9
CCDC43Q96MW1 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 AC092047.1-201ENST00000424997 240 ntBASIC3.17□□□□□ -1.9
CCDC43Q96MW1 AC009414.1-201ENST00000427200 443 ntBASIC3.17□□□□□ -1.9
CCDC43Q96MW1 AC007919.1-201ENST00000429380 217 ntBASIC3.17□□□□□ -1.9
CCDC43Q96MW1 AC087499.2-201ENST00000432861 149 ntBASIC3.17□□□□□ -1.9
CCDC43Q96MW1 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 BNIP3P2-201ENST00000441221 577 ntBASIC3.17□□□□□ -1.9
CCDC43Q96MW1 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 MTCO1P27-201ENST00000448269 226 ntBASIC3.17□□□□□ -1.9
CCDC43Q96MW1 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC43Q96MW1 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 132.3 ms