Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CHFRQ96EP1 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CHFRQ96EP1 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CHFRQ96EP1 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CHFRQ96EP1 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 SNORA71.3-201ENST00000362582 128 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 RNU6-379P-201ENST00000363813 104 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 RNU6-26P-201ENST00000383985 107 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 SNORD66.1-201ENST00000391230 76 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 AL121972.1-201ENST00000402023 252 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 AL591416.1-201ENST00000404015 867 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 RPS12P24-201ENST00000412619 387 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 HSPE1P1-201ENST00000421494 318 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CHFRQ96EP1 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 UBE2V1P5-201ENST00000440070 405 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 AL049734.2-201ENST00000441066 616 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 BTF3P15-201ENST00000455606 336 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 RPS20P21-201ENST00000466859 343 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 AC078785.3-201ENST00000476607 425 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 RPS29P19-201ENST00000479709 171 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 RNU2-58P-201ENST00000516403 183 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 HMGB1P41-201ENST00000520234 440 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CHFRQ96EP1 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 AL161670.1-201ENST00000554348 137 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 AC022655.2-201ENST00000577280 318 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 APOOP1-201ENST00000604695 592 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CHFRQ96EP1 U2.22-201ENST00000636441 106 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CHFRQ96EP1 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CHFRQ96EP1 AC027290.2-201ENST00000623210 18662 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 AC087190.4-201ENST00000574616 8334 ntBASIC4.29□□□□□ -1.72
CHFRQ96EP1 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.28□□□□□ -1.72
CHFRQ96EP1 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CHFRQ96EP1 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
CHFRQ96EP1 AC006020.1-201ENST00000420179 1854 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CHFRQ96EP1 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CHFRQ96EP1 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CHFRQ96EP1 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CHFRQ96EP1 Y_RNA.46-201ENST00000362695 102 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 Y_RNA.149-201ENST00000363558 117 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 RNU4-1-201ENST00000363925 141 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 RNU6-289P-201ENST00000364093 107 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 Y_RNA.339-201ENST00000365325 102 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 Y_RNA.557-201ENST00000384680 107 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 HMGB3P2-201ENST00000411913 584 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 AL451062.2-201ENST00000427515 271 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 PSMA2P3-201ENST00000429685 675 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 RPS20P32-201ENST00000456044 356 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 RPS4XP10-201ENST00000465034 731 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 AL035404.1-201ENST00000497982 568 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.28□□□□□ -1.72
CHFRQ96EP1 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.28□□□□□ -1.72
CHFRQ96EP1 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CHFRQ96EP1 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.28□□□□□ -1.72
CHFRQ96EP1 RNA5SP309-201ENST00000516670 106 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 RNU6-1220P-201ENST00000517126 108 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 APOOP3-201ENST00000536787 586 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.28□□□□□ -1.72
CHFRQ96EP1 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.28□□□□□ -1.72
CHFRQ96EP1 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.28□□□□□ -1.72
CHFRQ96EP1 AC073539.2-201ENST00000597113 165 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC4.28□□□□□ -1.72
CHFRQ96EP1 AL354950.2-201ENST00000617939 290 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 RMST_9.1-201ENST00000619945 193 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CHFRQ96EP1 AC006065.5-201ENST00000623427 349 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 AC022418.1-201ENST00000624118 445 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 Z69720.2-201ENST00000624755 279 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 AC026634.1-201ENST00000634369 198 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 AC012442.3-202ENST00000636742 206 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.28□□□□□ -1.72
CHFRQ96EP1 MARK2P15-201ENST00000432204 2186 ntBASIC4.28□□□□□ -1.72
CHFRQ96EP1 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CHFRQ96EP1 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CHFRQ96EP1 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CHFRQ96EP1 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.27□□□□□ -1.73
CHFRQ96EP1 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.27□□□□□ -1.73
CHFRQ96EP1 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms