Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 SCGB1D5P-201ENST00000515134 247 ntBASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 RN7SKP57-201ENST00000517248 293 ntBASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 AC090615.1-201ENST00000577519 154 ntBASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 AC008739.2-201ENST00000597006 317 ntBASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 AC068313.1-201ENST00000604028 1008 ntBASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 AP000254.1-201ENST00000609934 520 ntBASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 TUG1_1.1-201ENST00000610654 145 ntBASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 AL603758.1-201ENST00000618654 241 ntBASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 ABBA01000935.2-201ENST00000637477 838 ntBASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 AC006927.4-201ENST00000639187 543 ntBASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 MTND5P1-201ENST00000445440 1375 ntBASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 AC005539.1-201ENST00000443768 1479 ntBASIC2.45□□□□□ -2.02
CCDC54Q8NEL0 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 SNORA4.1-201ENST00000364263 144 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 5S_rRNA.1-201ENST00000364415 116 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 RNU6-359P-201ENST00000365466 108 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 MIR181A2-201ENST00000384863 110 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 SNORA48.5-201ENST00000391143 135 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AL138885.1-201ENST00000405921 675 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 RPL7P37-201ENST00000425095 738 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 SUMO1P4-201ENST00000429430 302 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 NDUFB4P6-201ENST00000436819 366 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 Z80107.1-201ENST00000436830 412 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AP000542.1-201ENST00000448473 371 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AL135752.1-201ENST00000479477 471 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AC074250.1-201ENST00000511117 192 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 TTC39CP1-201ENST00000512513 755 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AC022483.1-201ENST00000514020 567 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 RNU6-311P-201ENST00000516224 102 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 RNU6-798P-201ENST00000516912 103 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 RN7SKP40-201ENST00000517211 242 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 ELOCP31-201ENST00000540463 467 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 ZNF861P-201ENST00000588126 639 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AL596327.1-201ENST00000603629 213 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AL137843.1-201ENST00000605078 385 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AL592221.1-201ENST00000605266 382 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AC013244.3-201ENST00000605614 388 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AL158211.4-201ENST00000606988 584 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AP000240.1-201ENST00000609910 452 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AC010297.1-201ENST00000623948 149 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 CR381653.2-201ENST00000624041 768 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 FO624990.1-201ENST00000636373 85 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AP000526.1-201ENST00000603308 1388 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 AC092593.1-201ENST00000515413 1815 ntBASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC54Q8NEL0 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 RNU6-270P-201ENST00000364131 105 ntBASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 RNU1-138P-201ENST00000384093 164 ntBASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 RNU6-114P-201ENST00000384704 105 ntBASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 RNVU1-14-201ENST00000384770 164 ntBASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 RSL24D1P3-201ENST00000449255 495 ntBASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 SNRPGP6-201ENST00000451124 220 ntBASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 AP000705.1-201ENST00000454567 350 ntBASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 FTH1P2-201ENST00000466086 412 ntBASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 RN7SL297P-201ENST00000483161 293 ntBASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 LTV1P1-201ENST00000510683 1237 ntBASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 MTCYBP43-201ENST00000513621 740 ntBASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 AC009812.2-201ENST00000517657 457 ntBASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 AP000867.2-201ENST00000532468 320 ntBASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 AC004486.1-201ENST00000546846 233 ntBASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 AC009163.5-201ENST00000575421 637 ntBASIC2.43□□□□□ -2.02
CCDC54Q8NEL0 MIR4444-1-201ENST00000581696 74 ntBASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms