Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC090096.1-201ENST00000489168 390 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 AC093767.1-201ENST00000504523 156 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 AC091885.1-201ENST00000506658 268 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 RNU4ATAC8P-201ENST00000516196 109 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 SNORD27.1-201ENST00000516319 72 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 NCAPGP2-201ENST00000557911 754 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 AC019176.2-201ENST00000611579 315 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 5S_rRNA.16-201ENST00000612928 119 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 AC040896.1-201ENST00000613819 479 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 AP001005.3-201ENST00000622049 129 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 OR1S2-201ENST00000302592 978 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 RNA5SP258-201ENST00000362750 119 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 MIR514A2-201ENST00000385131 88 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 MIR514A3-201ENST00000385132 88 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 RPL5P18-201ENST00000406671 891 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 RNU6-603P-201ENST00000411403 107 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 RPS29P4-201ENST00000414733 161 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 AC009965.2-201ENST00000425328 970 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 OR4K11P-201ENST00000431829 904 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 AL138799.3-201ENST00000438968 350 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 AL049714.1-201ENST00000466686 347 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 FRG2DP-202ENST00000566967 323 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 OR4K8P-201ENST00000578842 1048 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 UBE2L4-201ENST00000587688 464 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 AL596245.1-201ENST00000618994 362 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 AC040168.1-201ENST00000623594 991 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 AL159972.1-201ENST00000625150 448 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 AL133216.2-202ENST00000634512 349 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 AC119674.1-207ENST00000641355 633 ntBASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
USHBP1Q8N6Y0 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 MTND5P28-201ENST00000438005 1594 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 AC009902.3-201ENST00000606235 2172 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 AL445437.1-201ENST00000623157 3087 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 MIR369-201ENST00000362155 70 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 RNU5E-8P-201ENST00000363502 116 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 Y_RNA.145-201ENST00000363527 102 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 Y_RNA.234-201ENST00000364409 97 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 RNY3P13-201ENST00000365542 102 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 Y_RNA.373-201ENST00000365600 103 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 RNU6-1226P-201ENST00000384317 107 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 RPL7AP73-201ENST00000413490 353 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 RPS26P47-201ENST00000427219 348 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 PSMA6P3-201ENST00000428242 164 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 MTND3P2-201ENST00000438452 342 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 AC104073.1-201ENST00000451988 151 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 AL136126.1-201ENST00000473603 402 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 RPL21P99-201ENST00000480369 423 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 AC006517.1-201ENST00000480485 328 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 AC004062.1-201ENST00000509926 645 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 MIR3200-201ENST00000580767 85 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 AC006116.10-201ENST00000591836 581 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 AC106900.2-201ENST00000604994 317 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 AC004908.2-201ENST00000609090 574 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 AC116447.1-201ENST00000613153 453 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 U6.105-201ENST00000637379 88 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 ATM-230ENST00000640388 578 ntTSL 5 BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms