Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 OR4G1P-203ENST00000641984 1631 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 RNU6-1077P-201ENST00000410506 102 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 HMGN2P38-201ENST00000423806 265 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 RPS4XP11-201ENST00000446897 772 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 RPS15AP17-201ENST00000470598 390 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 AC090096.1-201ENST00000489168 390 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 RN7SL274P-201ENST00000492268 272 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 AC008427.1-201ENST00000503102 655 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC1.99□□□□□ -2.09
USP54Q70EL1 AC093281.2-201ENST00000510153 597 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 RNA5SP364-201ENST00000516938 78 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 AP004607.1-201ENST00000524456 203 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC1.99□□□□□ -2.09
USP54Q70EL1 AC068944.2-201ENST00000610373 403 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 AL590282.1-201ENST00000610379 1136 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 AL390240.1-201ENST00000612950 384 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 AC073055.1-201ENST00000456901 1621 ntBASIC1.98□□□□□ -2.09
USP54Q70EL1 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC1.98□□□□□ -2.09
USP54Q70EL1 RNU6-185P-201ENST00000384421 107 ntBASIC1.98□□□□□ -2.09
USP54Q70EL1 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.98□□□□□ -2.09
USP54Q70EL1 RABEPKP1-201ENST00000440529 1026 ntBASIC1.98□□□□□ -2.09
USP54Q70EL1 RPS24P6-201ENST00000452670 400 ntBASIC1.98□□□□□ -2.09
USP54Q70EL1 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.98□□□□□ -2.09
USP54Q70EL1 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC1.98□□□□□ -2.09
USP54Q70EL1 AC022690.1-201ENST00000526681 550 ntBASIC1.98□□□□□ -2.09
USP54Q70EL1 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC1.98□□□□□ -2.09
USP54Q70EL1 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.98□□□□□ -2.09
USP54Q70EL1 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.98□□□□□ -2.09
USP54Q70EL1 AC010615.3-201ENST00000597319 394 ntBASIC1.98□□□□□ -2.09
USP54Q70EL1 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
USP54Q70EL1 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.98□□□□□ -2.09
USP54Q70EL1 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.97□□□□□ -2.09
USP54Q70EL1 SNRPEP2-201ENST00000397592 279 ntBASIC1.97□□□□□ -2.09
USP54Q70EL1 BX682237.1-201ENST00000415016 335 ntBASIC1.97□□□□□ -2.09
USP54Q70EL1 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC1.97□□□□□ -2.09
USP54Q70EL1 AC009474.2-201ENST00000451383 136 ntBASIC1.97□□□□□ -2.09
USP54Q70EL1 HMGB1P26-201ENST00000452520 628 ntBASIC1.97□□□□□ -2.09
USP54Q70EL1 SEM1P1-201ENST00000506694 209 ntBASIC1.97□□□□□ -2.09
USP54Q70EL1 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC1.97□□□□□ -2.09
USP54Q70EL1 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC1.97□□□□□ -2.09
USP54Q70EL1 OR4V1P-201ENST00000525394 1140 ntBASIC1.97□□□□□ -2.09
USP54Q70EL1 MIR3199-1-201ENST00000582434 88 ntBASIC1.97□□□□□ -2.09
USP54Q70EL1 AL138880.2-201ENST00000616214 239 ntBASIC1.97□□□□□ -2.09
USP54Q70EL1 AC020923.1-201ENST00000624021 917 ntBASIC1.97□□□□□ -2.09
USP54Q70EL1 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC1.97□□□□□ -2.09
USP54Q70EL1 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.97□□□□□ -2.09
USP54Q70EL1 SNORA14A-201ENST00000364773 135 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 SNORD114-22-201ENST00000365423 72 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 Y_RNA.354-201ENST00000365448 111 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 AGR3-202ENST00000402239 563 ntTSL 2 BASIC1.96□□□□□ -2.1
USP54Q70EL1 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC1.96□□□□□ -2.1
USP54Q70EL1 RPL21P32-201ENST00000419877 477 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 HMGN2P19-201ENST00000425149 265 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 AL354695.1-201ENST00000427935 228 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
USP54Q70EL1 AL627224.1-201ENST00000448334 444 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC1.96□□□□□ -2.1
USP54Q70EL1 AC087879.1-201ENST00000474343 374 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 AC034244.1-201ENST00000507687 207 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC1.96□□□□□ -2.1
USP54Q70EL1 MTCO3P24-201ENST00000572729 782 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC1.96□□□□□ -2.1
USP54Q70EL1 GLUD1P4-201ENST00000590914 418 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 AC011477.1-204ENST00000623416 1325 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 AC006026.1-201ENST00000444025 1803 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC1.96□□□□□ -2.1
USP54Q70EL1 PABPC1P7-201ENST00000413177 1513 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 AC008568.2-201ENST00000623862 2313 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 MAPK10-266ENST00000641066 6555 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 SNORD56.5-201ENST00000364281 72 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 NUP35P2-201ENST00000416748 943 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 MTCYBP24-201ENST00000420387 1106 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC1.96□□□□□ -2.1
USP54Q70EL1 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.96□□□□□ -2.1
USP54Q70EL1 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC1.96□□□□□ -2.1
USP54Q70EL1 AC067904.2-201ENST00000517322 1283 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC1.96□□□□□ -2.1
USP54Q70EL1 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.96□□□□□ -2.1
USP54Q70EL1 AC073111.2-201ENST00000605657 1075 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 AL353770.2-201ENST00000620024 78 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.1
USP54Q70EL1 uc_338.20-201ENST00000621563 178 ntBASIC1.96□□□□□ -2.1
USP54Q70EL1 AC093536.2-201ENST00000565257 1406 ntBASIC1.95□□□□□ -2.1
USP54Q70EL1 AC090740.1-201ENST00000623193 2262 ntBASIC1.95□□□□□ -2.1
USP54Q70EL1 RNU6-1180P-201ENST00000364935 107 ntBASIC1.95□□□□□ -2.1
USP54Q70EL1 CD24P4-201ENST00000382840 243 ntBASIC1.95□□□□□ -2.1
USP54Q70EL1 AL136133.1-201ENST00000413694 376 ntBASIC1.95□□□□□ -2.1
USP54Q70EL1 AC006548.1-201ENST00000427470 102 ntBASIC1.95□□□□□ -2.1
USP54Q70EL1 AC244505.5-201ENST00000443639 207 ntBASIC1.95□□□□□ -2.1
USP54Q70EL1 AC017099.1-201ENST00000448261 1028 ntBASIC1.95□□□□□ -2.1
USP54Q70EL1 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.95□□□□□ -2.1
USP54Q70EL1 MTCO2P9-201ENST00000503214 694 ntBASIC1.95□□□□□ -2.1
USP54Q70EL1 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC1.95□□□□□ -2.1
USP54Q70EL1 RNU1-92P-201ENST00000517017 135 ntBASIC1.95□□□□□ -2.1
USP54Q70EL1 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.95□□□□□ -2.1
USP54Q70EL1 AC010928.2-201ENST00000588017 287 ntBASIC1.95□□□□□ -2.1
USP54Q70EL1 AC022709.1-201ENST00000615967 87 ntBASIC1.95□□□□□ -2.1
USP54Q70EL1 U6.48-201ENST00000618523 106 ntBASIC1.95□□□□□ -2.1
USP54Q70EL1 AC007275.1-201ENST00000621243 671 ntBASIC1.95□□□□□ -2.1
USP54Q70EL1 CR381572.1-201ENST00000625098 102 ntBASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms