Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 ARL5AP3-201ENST00000439327 386 ntBASIC1.23□□□□□ -2.21
CHD9Q3L8U1 SNRPGP3-201ENST00000469405 227 ntBASIC1.23□□□□□ -2.21
CHD9Q3L8U1 AC108078.1-201ENST00000508073 725 ntBASIC1.23□□□□□ -2.21
CHD9Q3L8U1 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC1.23□□□□□ -2.21
CHD9Q3L8U1 AC012531.5-201ENST00000611375 151 ntBASIC1.23□□□□□ -2.21
CHD9Q3L8U1 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC1.23□□□□□ -2.21
CHD9Q3L8U1 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
CHD9Q3L8U1 AK6-205ENST00000618980 483 ntTSL 2 BASIC1.23□□□□□ -2.21
CHD9Q3L8U1 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.23□□□□□ -2.21
CHD9Q3L8U1 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC1.23□□□□□ -2.21
CHD9Q3L8U1 Y_RNA.115-201ENST00000363272 98 ntBASIC1.23□□□□□ -2.21
CHD9Q3L8U1 SNORA81-201ENST00000408493 178 ntBASIC1.23□□□□□ -2.21
CHD9Q3L8U1 AC007390.1-201ENST00000415722 356 ntBASIC1.23□□□□□ -2.21
CHD9Q3L8U1 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.23□□□□□ -2.21
CHD9Q3L8U1 USP9YP7-201ENST00000436723 430 ntBASIC1.23□□□□□ -2.21
CHD9Q3L8U1 USP9YP32-201ENST00000452432 430 ntBASIC1.23□□□□□ -2.21
CHD9Q3L8U1 SNORD108-201ENST00000459332 71 ntBASIC1.23□□□□□ -2.21
CHD9Q3L8U1 AC093801.2-201ENST00000503966 1050 ntBASIC1.23□□□□□ -2.21
CHD9Q3L8U1 MTCO1P30-201ENST00000515244 580 ntBASIC1.23□□□□□ -2.21
CHD9Q3L8U1 AP004242.1-201ENST00000533701 349 ntBASIC1.23□□□□□ -2.21
CHD9Q3L8U1 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC1.23□□□□□ -2.21
CHD9Q3L8U1 NIFKP8-201ENST00000560500 874 ntBASIC1.23□□□□□ -2.21
CHD9Q3L8U1 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.23□□□□□ -2.21
CHD9Q3L8U1 RNU1-52P-201ENST00000384190 164 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 CCNB2P1-201ENST00000399411 1150 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AL590233.1-201ENST00000430017 456 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AC073901.1-201ENST00000462471 408 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AC145207.9-201ENST00000623802 325 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.22□□□□□ -2.21
CHD9Q3L8U1 IL33-203ENST00000456383 2501 ntTSL 5 BASIC1.22□□□□□ -2.21
CHD9Q3L8U1 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AL512661.1-201ENST00000434586 1253 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AC069277.2-201ENST00000454211 432 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AL583843.1-201ENST00000456070 346 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 CFTRP1-201ENST00000456646 183 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AC012181.1-201ENST00000479895 423 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 OR5H4P-201ENST00000510851 923 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AC118942.1-201ENST00000529674 1035 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC1.22□□□□□ -2.21
CHD9Q3L8U1 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AC098592.2-201ENST00000413158 265 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC1.22□□□□□ -2.21
CHD9Q3L8U1 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AP000873.1-201ENST00000463987 400 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 MTCO2P9-201ENST00000503214 694 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AC019131.2-201ENST00000609071 870 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AC116447.1-201ENST00000613153 453 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 AC098657.3-201ENST00000620434 263 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 C2orf27A-204ENST00000623058 969 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 CFTRP2-201ENST00000634304 199 ntBASIC1.22□□□□□ -2.21
CHD9Q3L8U1 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.21□□□□□ -2.22
CHD9Q3L8U1 AC007098.1-201ENST00000420122 367 ntBASIC1.21□□□□□ -2.22
CHD9Q3L8U1 SNRPEP10-201ENST00000420249 274 ntBASIC1.21□□□□□ -2.22
CHD9Q3L8U1 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC1.21□□□□□ -2.22
CHD9Q3L8U1 LARP7P4-201ENST00000481075 878 ntBASIC1.21□□□□□ -2.22
CHD9Q3L8U1 AC023790.1-201ENST00000482174 347 ntBASIC1.21□□□□□ -2.22
CHD9Q3L8U1 C1GALT1P2-201ENST00000510813 1104 ntBASIC1.21□□□□□ -2.22
CHD9Q3L8U1 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC1.21□□□□□ -2.22
CHD9Q3L8U1 SETP7-201ENST00000552169 453 ntBASIC1.21□□□□□ -2.22
CHD9Q3L8U1 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC1.21□□□□□ -2.22
CHD9Q3L8U1 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
CHD9Q3L8U1 AL096701.2-201ENST00000416920 238 ntBASIC1.21□□□□□ -2.22
CHD9Q3L8U1 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC1.21□□□□□ -2.22
CHD9Q3L8U1 EZH2P1-201ENST00000431167 291 ntBASIC1.21□□□□□ -2.22
CHD9Q3L8U1 AC087343.1-201ENST00000477341 475 ntBASIC1.21□□□□□ -2.22
CHD9Q3L8U1 SNX5P1-201ENST00000505757 1041 ntBASIC1.21□□□□□ -2.22
CHD9Q3L8U1 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC1.21□□□□□ -2.22
CHD9Q3L8U1 AP004607.1-201ENST00000524456 203 ntBASIC1.21□□□□□ -2.22
CHD9Q3L8U1 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC1.21□□□□□ -2.22
CHD9Q3L8U1 AC084757.1-201ENST00000559987 490 ntBASIC1.21□□□□□ -2.22
CHD9Q3L8U1 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC1.21□□□□□ -2.22
CHD9Q3L8U1 AC005156.1-201ENST00000613371 573 ntBASIC1.21□□□□□ -2.22
CHD9Q3L8U1 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC1.21□□□□□ -2.22
CHD9Q3L8U1 AC090740.1-201ENST00000623193 2262 ntBASIC1.2□□□□□ -2.22
CHD9Q3L8U1 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC1.2□□□□□ -2.22
CHD9Q3L8U1 AC008850.1-201ENST00000427546 362 ntBASIC1.2□□□□□ -2.22
CHD9Q3L8U1 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.2□□□□□ -2.22
CHD9Q3L8U1 HAUS1P1-201ENST00000505275 832 ntBASIC1.2□□□□□ -2.22
CHD9Q3L8U1 AC105313.1-201ENST00000509121 353 ntBASIC1.2□□□□□ -2.22
CHD9Q3L8U1 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.2□□□□□ -2.22
CHD9Q3L8U1 AC006338.1-201ENST00000618453 749 ntBASIC1.2□□□□□ -2.22
CHD9Q3L8U1 AL445493.3-201ENST00000619568 477 ntBASIC1.2□□□□□ -2.22
CHD9Q3L8U1 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
CHD9Q3L8U1 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC1.2□□□□□ -2.22
CHD9Q3L8U1 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
CHD9Q3L8U1 AL157700.1-201ENST00000561973 1432 ntBASIC1.2□□□□□ -2.22
CHD9Q3L8U1 AC000367.1-201ENST00000452711 1766 ntBASIC1.2□□□□□ -2.22
CHD9Q3L8U1 RNA5SP62-201ENST00000363457 110 ntBASIC1.2□□□□□ -2.22
CHD9Q3L8U1 MTND4LP21-201ENST00000415303 295 ntBASIC1.2□□□□□ -2.22
CHD9Q3L8U1 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.2□□□□□ -2.22
CHD9Q3L8U1 KATNBL1P4-201ENST00000503545 918 ntBASIC1.2□□□□□ -2.22
CHD9Q3L8U1 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC1.2□□□□□ -2.22
CHD9Q3L8U1 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.2□□□□□ -2.22
CHD9Q3L8U1 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms