Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC4.91□□□□□ -1.62
SF3A1Q15459 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.91□□□□□ -1.62
SF3A1Q15459 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.91□□□□□ -1.62
SF3A1Q15459 AC174048.1-201ENST00000603389 144 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 AC008945.2-201ENST00000606056 604 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 AC022893.3-201ENST00000607665 437 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 AC023043.4-201ENST00000612081 449 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 AC083809.1-201ENST00000615051 472 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
SF3A1Q15459 uc_338.13-201ENST00000618243 179 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC4.91□□□□□ -1.62
SF3A1Q15459 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SF3A1Q15459 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC4.91□□□□□ -1.62
SF3A1Q15459 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SF3A1Q15459 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.91□□□□□ -1.62
SF3A1Q15459 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
SF3A1Q15459 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.9□□□□□ -1.62
SF3A1Q15459 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.9□□□□□ -1.62
SF3A1Q15459 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.9□□□□□ -1.62
SF3A1Q15459 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
SF3A1Q15459 AC106871.1-201ENST00000568324 3102 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 AC126755.2-208ENST00000327792 462 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 AC138969.1-213ENST00000331436 462 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 MIR448-201ENST00000362131 111 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 MIR3074-201ENST00000384885 81 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 RN7SKP285-201ENST00000410137 318 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 RPS12P24-201ENST00000412619 387 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 USP9YP6-201ENST00000413550 854 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 RPL30P2-201ENST00000414021 291 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC4.9□□□□□ -1.63
SF3A1Q15459 AC092573.2-201ENST00000434546 243 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 TAAR7P-201ENST00000436141 242 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 NDUFB4P6-201ENST00000436819 366 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 PIGFP3-201ENST00000441918 722 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 AC073415.1-201ENST00000449240 153 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.9□□□□□ -1.63
SF3A1Q15459 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.9□□□□□ -1.63
SF3A1Q15459 RPS23P7-201ENST00000466210 444 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.9□□□□□ -1.63
SF3A1Q15459 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC4.9□□□□□ -1.63
SF3A1Q15459 AC092436.1-201ENST00000506450 503 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 AC017037.1-201ENST00000508460 471 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 PCBP2P3-201ENST00000509726 843 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 RNA5SP73-201ENST00000516744 108 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC4.9□□□□□ -1.63
SF3A1Q15459 ATP5F1P5-201ENST00000526403 760 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.9□□□□□ -1.63
SF3A1Q15459 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.9□□□□□ -1.63
SF3A1Q15459 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.9□□□□□ -1.63
SF3A1Q15459 AC006064.5-201ENST00000541782 248 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4.9□□□□□ -1.63
SF3A1Q15459 NRBF2P5-201ENST00000603087 788 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 AC113403.1-201ENST00000604910 193 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 AL110115.1-201ENST00000614396 364 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 AC024940.5-201ENST00000622889 474 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SF3A1Q15459 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
SF3A1Q15459 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SF3A1Q15459 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SF3A1Q15459 AL133383.2-201ENST00000622958 2336 ntBASIC4.9□□□□□ -1.63
SF3A1Q15459 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
SF3A1Q15459 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SF3A1Q15459 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SF3A1Q15459 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SF3A1Q15459 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SF3A1Q15459 RNU6-552P-201ENST00000362869 119 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
SF3A1Q15459 RNU6-1197P-201ENST00000391183 107 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 CISD1P1-201ENST00000393907 327 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 SNORA11-201ENST00000408789 128 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 RNU6-908P-201ENST00000410160 94 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC4.89□□□□□ -1.63
SF3A1Q15459 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC4.89□□□□□ -1.63
SF3A1Q15459 Z85995.1-201ENST00000415547 335 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.89□□□□□ -1.63
SF3A1Q15459 CALM2P2-201ENST00000428512 440 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC4.89□□□□□ -1.63
SF3A1Q15459 AC122718.1-201ENST00000439448 744 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC4.89□□□□□ -1.63
SF3A1Q15459 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.89□□□□□ -1.63
SF3A1Q15459 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC4.89□□□□□ -1.63
SF3A1Q15459 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC4.89□□□□□ -1.63
SF3A1Q15459 FAM133DP-201ENST00000464802 691 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 RPL31P58-201ENST00000469001 379 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 RN7SL585P-201ENST00000470538 280 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.89□□□□□ -1.63
SF3A1Q15459 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC4.89□□□□□ -1.63
SF3A1Q15459 AC020593.1-201ENST00000507399 299 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 RNA5SP471-201ENST00000516971 106 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.89□□□□□ -1.63
SF3A1Q15459 TOMM20P2-201ENST00000540082 421 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC4.89□□□□□ -1.63
SF3A1Q15459 PARP1P2-201ENST00000556806 195 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 MIR5096-201ENST00000583713 70 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.89□□□□□ -1.63
SF3A1Q15459 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.89□□□□□ -1.63
SF3A1Q15459 AC107294.1-201ENST00000609524 467 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 uc_338.11-201ENST00000619132 160 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms