Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 XGY1-201ENST00000381172 446 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
FOXA1P55317 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.06□□□□□ -2.08
FOXA1P55317 RNA5SP38-201ENST00000410750 119 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 OOSP1P1-201ENST00000423265 274 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC2.06□□□□□ -2.08
FOXA1P55317 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
FOXA1P55317 HIGD1AP2-201ENST00000446367 280 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 AC079776.3-201ENST00000450665 370 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 EEF1B2P7-201ENST00000451177 676 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 AL021397.1-201ENST00000451806 248 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC2.06□□□□□ -2.08
FOXA1P55317 AC135721.1-201ENST00000497954 479 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 CBX3P3-201ENST00000508108 532 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 AC010460.2-201ENST00000509054 677 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 SCARNA16.3-201ENST00000516595 184 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 RNU6-1261P-201ENST00000517194 104 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.06□□□□□ -2.08
FOXA1P55317 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.06□□□□□ -2.08
FOXA1P55317 OR10V3P-201ENST00000525712 725 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 AP001189.2-201ENST00000527320 189 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 OR4R1P-201ENST00000529879 463 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.06□□□□□ -2.08
FOXA1P55317 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC2.06□□□□□ -2.08
FOXA1P55317 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC2.06□□□□□ -2.08
FOXA1P55317 ACTR3BP3-201ENST00000565577 979 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 AC126365.2-201ENST00000580630 379 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 MIR5194-201ENST00000582634 120 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC2.06□□□□□ -2.08
FOXA1P55317 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.06□□□□□ -2.08
FOXA1P55317 AC245036.5-201ENST00000596330 847 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 AC106900.2-201ENST00000604994 317 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 AC109454.4-201ENST00000623411 649 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC2.06□□□□□ -2.08
FOXA1P55317 AC126544.2-201ENST00000625174 749 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 AC093536.2-201ENST00000565257 1406 ntBASIC2.06□□□□□ -2.08
FOXA1P55317 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC2.05□□□□□ -2.08
FOXA1P55317 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.05□□□□□ -2.08
FOXA1P55317 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
FOXA1P55317 RNU6-878P-201ENST00000384578 110 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 SNORA48.3-201ENST00000391081 134 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 RPS4XP3-201ENST00000398541 413 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 RPS4XP7-201ENST00000406274 780 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 AC096533.1-201ENST00000411645 353 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.05□□□□□ -2.08
FOXA1P55317 USP9YP21-201ENST00000420603 432 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
FOXA1P55317 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.05□□□□□ -2.08
FOXA1P55317 MYL8P-204ENST00000431574 518 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 AL589880.1-201ENST00000448271 287 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 USP9YP34-201ENST00000453983 808 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 RFC5P1-201ENST00000454419 874 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 Z82190.1-201ENST00000454534 490 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 AC109486.1-201ENST00000486833 374 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
FOXA1P55317 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
FOXA1P55317 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC2.05□□□□□ -2.08
FOXA1P55317 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
FOXA1P55317 RNU6-1028P-201ENST00000517164 93 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC2.05□□□□□ -2.08
FOXA1P55317 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
FOXA1P55317 DEFB130C-202ENST00000530001 230 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
FOXA1P55317 AC121758.2-201ENST00000553271 193 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.05□□□□□ -2.08
FOXA1P55317 AC091544.4-201ENST00000555268 342 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 MED28P6-201ENST00000558776 231 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.05□□□□□ -2.08
FOXA1P55317 BNIP3P24-201ENST00000593398 557 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC2.05□□□□□ -2.08
FOXA1P55317 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.05□□□□□ -2.08
FOXA1P55317 MKKS-204ENST00000639674 192 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.05□□□□□ -2.08
FOXA1P55317 AC135776.4-201ENST00000624300 1904 ntBASIC2.05□□□□□ -2.08
FOXA1P55317 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
FOXA1P55317 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
FOXA1P55317 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
FOXA1P55317 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
FOXA1P55317 Y_RNA.25-201ENST00000362528 102 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 RNU6-1155P-201ENST00000363554 107 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 RNA5SP139-201ENST00000364340 117 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC2.04□□□□□ -2.08
FOXA1P55317 MIR506-201ENST00000384998 124 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
FOXA1P55317 SNRPEP2-201ENST00000397592 279 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 MTCO1P56-201ENST00000401674 224 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
FOXA1P55317 RNU2-47P-201ENST00000410649 186 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 RNA5SP508-201ENST00000411327 119 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 RPS15AP38-201ENST00000413110 372 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC2.04□□□□□ -2.08
FOXA1P55317 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC2.04□□□□□ -2.08
FOXA1P55317 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC2.04□□□□□ -2.08
FOXA1P55317 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 USP9YP8-201ENST00000441913 500 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC2.04□□□□□ -2.08
FOXA1P55317 AC234775.1-201ENST00000454247 670 ntBASIC2.04□□□□□ -2.08
FOXA1P55317 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2.04□□□□□ -2.08
FOXA1P55317 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 134.9 ms