Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC079597.1-201ENST00000624306 508 ntBASIC3.01□□□□□ -1.93
TNFRSF4P43489 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.01□□□□□ -1.93
TNFRSF4P43489 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.01□□□□□ -1.93
TNFRSF4P43489 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
TNFRSF4P43489 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
TNFRSF4P43489 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.01□□□□□ -1.93
TNFRSF4P43489 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
TNFRSF4P43489 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3□□□□□ -1.93
TNFRSF4P43489 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3□□□□□ -1.93
TNFRSF4P43489 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3□□□□□ -1.93
TNFRSF4P43489 SDAD1P2-201ENST00000441308 2028 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3□□□□□ -1.93
TNFRSF4P43489 ZNF542P-204ENST00000482727 1305 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3□□□□□ -1.93
TNFRSF4P43489 AC005183.1-201ENST00000603687 1979 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3□□□□□ -1.93
TNFRSF4P43489 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3□□□□□ -1.93
TNFRSF4P43489 AL672167.1-206ENST00000356293 943 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 Y_RNA.169-201ENST00000363745 96 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 RNU6-723P-201ENST00000383973 107 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 U3.20-201ENST00000390909 217 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 RNU6-1197P-201ENST00000391183 107 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 AL590084.2-201ENST00000401481 382 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 AL354719.1-201ENST00000406535 843 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 AC098592.1-201ENST00000419352 333 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3□□□□□ -1.93
TNFRSF4P43489 RPL7L1P10-201ENST00000427790 463 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 RPL21P40-201ENST00000428586 483 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 AL590383.1-201ENST00000428602 75 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 AL035407.1-201ENST00000429211 571 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 YWHAZP7-201ENST00000436906 631 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 AL117351.1-201ENST00000438864 766 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC3□□□□□ -1.93
TNFRSF4P43489 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3□□□□□ -1.93
TNFRSF4P43489 LINC00888-204ENST00000487386 421 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 AC147055.4-201ENST00000504399 745 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3□□□□□ -1.93
TNFRSF4P43489 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3□□□□□ -1.93
TNFRSF4P43489 MTND5P4-201ENST00000514978 288 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 RNU6-1129P-201ENST00000515964 104 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3□□□□□ -1.93
TNFRSF4P43489 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC3□□□□□ -1.93
TNFRSF4P43489 SETP2-201ENST00000553886 926 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3□□□□□ -1.93
TNFRSF4P43489 AC138761.3-201ENST00000579993 334 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3□□□□□ -1.93
TNFRSF4P43489 AC072039.2-201ENST00000608883 439 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 AC007318.2-201ENST00000620999 243 ntBASIC3□□□□□ -1.93
TNFRSF4P43489 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3□□□□□ -1.93
TNFRSF4P43489 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC3□□□□□ -1.93
TNFRSF4P43489 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3□□□□□ -1.93
TNFRSF4P43489 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3□□□□□ -1.93
TNFRSF4P43489 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
TNFRSF4P43489 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
TNFRSF4P43489 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.99□□□□□ -1.93
TNFRSF4P43489 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.99□□□□□ -1.93
TNFRSF4P43489 RNU5E-8P-201ENST00000363502 116 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 RNU6-1200P-201ENST00000384162 107 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 AL031121.1-201ENST00000406553 254 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 RN7SKP266-201ENST00000410232 287 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 RNA5SP274-201ENST00000410484 108 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 RNA5SP107-201ENST00000411358 122 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 MTND1P21-201ENST00000412991 285 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 AC107081.1-201ENST00000414975 361 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.99□□□□□ -1.93
TNFRSF4P43489 AL593851.1-201ENST00000426171 157 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 AC234781.2-201ENST00000426370 994 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
TNFRSF4P43489 LSM1P1-201ENST00000438629 273 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 MTND5P2-201ENST00000442927 1142 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.99□□□□□ -1.93
TNFRSF4P43489 MTND2P24-201ENST00000453434 806 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 ART2BP-201ENST00000453501 499 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 AL049874.1-201ENST00000489560 388 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 AC010486.2-201ENST00000505572 483 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 MRPS33P3-201ENST00000513456 322 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 RNU1-143P-201ENST00000516296 146 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 AC104027.1-201ENST00000521887 300 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.99□□□□□ -1.93
TNFRSF4P43489 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.99□□□□□ -1.93
TNFRSF4P43489 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.99□□□□□ -1.93
TNFRSF4P43489 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC2.99□□□□□ -1.93
TNFRSF4P43489 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.99□□□□□ -1.93
TNFRSF4P43489 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC2.99□□□□□ -1.93
TNFRSF4P43489 AC106791.2-201ENST00000604680 391 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 U1.23-201ENST00000610293 146 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 RNU1-68P-201ENST00000615382 146 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 U1.39-201ENST00000621562 146 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 AL356596.1-201ENST00000624230 379 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
TNFRSF4P43489 PCMTD1P7-201ENST00000634506 357 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
TNFRSF4P43489 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
TNFRSF4P43489 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC2.99□□□□□ -1.93
TNFRSF4P43489 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.99□□□□□ -1.93
TNFRSF4P43489 DDX10P1-201ENST00000448545 1933 ntBASIC2.99□□□□□ -1.93
TNFRSF4P43489 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
TNFRSF4P43489 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
TNFRSF4P43489 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 161.6 ms