Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 Y_RNA.706-201ENST00000516933 99 ntBASIC4.87□□□□□ -1.63
COL8A1P27658 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.87□□□□□ -1.63
COL8A1P27658 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.87□□□□□ -1.63
COL8A1P27658 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.87□□□□□ -1.63
COL8A1P27658 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC4.87□□□□□ -1.63
COL8A1P27658 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC4.87□□□□□ -1.63
COL8A1P27658 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC4.87□□□□□ -1.63
COL8A1P27658 AL133393.1-201ENST00000603277 287 ntBASIC4.87□□□□□ -1.63
COL8A1P27658 AL355816.1-201ENST00000607951 118 ntBASIC4.87□□□□□ -1.63
COL8A1P27658 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC4.87□□□□□ -1.63
COL8A1P27658 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL8A1P27658 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.87□□□□□ -1.63
COL8A1P27658 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
COL8A1P27658 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
COL8A1P27658 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL8A1P27658 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL8A1P27658 AC083843.3-201ENST00000623679 2186 ntBASIC4.87□□□□□ -1.63
COL8A1P27658 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC4.87□□□□□ -1.63
COL8A1P27658 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
COL8A1P27658 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
COL8A1P27658 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
COL8A1P27658 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL8A1P27658 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
COL8A1P27658 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
COL8A1P27658 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL8A1P27658 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
COL8A1P27658 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL8A1P27658 MIR133B-201ENST00000362210 119 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 Y_RNA.324-201ENST00000365165 102 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 RNA5SP30-201ENST00000365552 115 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 Y_RNA.405-201ENST00000383979 100 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 Y_RNA.451-201ENST00000384200 100 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 SNORA16A-201ENST00000384342 137 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 Y_RNA.524-201ENST00000384564 100 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 Y_RNA.561-201ENST00000384694 100 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 SNORA46.1-201ENST00000391069 153 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 RPL23AP26-201ENST00000412728 464 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 CYCSP33-201ENST00000414485 327 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC4.86□□□□□ -1.63
COL8A1P27658 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC4.86□□□□□ -1.63
COL8A1P27658 AC127537.2-201ENST00000439258 465 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 UQCRBP2-201ENST00000447827 297 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 AC010655.1-201ENST00000449336 292 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 AC010733.1-201ENST00000451515 401 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 AC004129.2-201ENST00000457229 287 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 U8.22-201ENST00000459141 133 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 SNRPCP3-201ENST00000474888 476 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.86□□□□□ -1.63
COL8A1P27658 AC004980.4-201ENST00000513375 203 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC4.86□□□□□ -1.63
COL8A1P27658 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC4.86□□□□□ -1.63
COL8A1P27658 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.86□□□□□ -1.63
COL8A1P27658 AC092490.3-201ENST00000545370 572 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.86□□□□□ -1.63
COL8A1P27658 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL8A1P27658 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.86□□□□□ -1.63
COL8A1P27658 AC234771.5-201ENST00000600161 514 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 AC039056.2-201ENST00000622261 511 ntBASIC4.86□□□□□ -1.63
COL8A1P27658 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
COL8A1P27658 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC4.86□□□□□ -1.63
COL8A1P27658 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC4.86□□□□□ -1.63
COL8A1P27658 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
COL8A1P27658 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL8A1P27658 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL8A1P27658 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
COL8A1P27658 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL8A1P27658 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL8A1P27658 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC4.86□□□□□ -1.63
COL8A1P27658 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL8A1P27658 DDX10P1-201ENST00000448545 1933 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL8A1P27658 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
COL8A1P27658 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL8A1P27658 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL8A1P27658 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL8A1P27658 RNU6-1301P-201ENST00000362724 104 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 RNU6-270P-201ENST00000364131 105 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 RNU6-755P-201ENST00000364400 103 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 RNA5-8SP5-201ENST00000365304 152 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 GNG5P2-201ENST00000372054 207 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 Y_RNA.563-201ENST00000384707 108 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 AL133388.1-201ENST00000404509 287 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 RNU4-30P-201ENST00000410245 143 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 RNU5A-5P-201ENST00000411054 116 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC4.85□□□□□ -1.63
COL8A1P27658 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.85□□□□□ -1.63
COL8A1P27658 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.85□□□□□ -1.63
COL8A1P27658 AC011742.1-201ENST00000431448 434 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC4.85□□□□□ -1.63
COL8A1P27658 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC4.85□□□□□ -1.63
COL8A1P27658 AC079354.2-201ENST00000453523 154 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC4.85□□□□□ -1.63
COL8A1P27658 RNU6-953P-201ENST00000459154 107 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 RNU6-1211P-201ENST00000459179 105 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 AC010683.1-201ENST00000473673 378 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.85□□□□□ -1.63
COL8A1P27658 MIR2117-201ENST00000516780 80 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.85□□□□□ -1.63
COL8A1P27658 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.85□□□□□ -1.63
COL8A1P27658 AP004242.1-201ENST00000533701 349 ntBASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms