Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AC020550.1-201ENST00000447385 163 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 NDUFAF4P3-201ENST00000456468 525 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 RPS15AP1-201ENST00000457423 391 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 Y_RNA.654-201ENST00000497848 106 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AC116655.1-201ENST00000508324 901 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 RNU4ATAC7P-201ENST00000516280 125 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AC090136.1-201ENST00000520009 240 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AP000907.2-201ENST00000530827 353 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AC091042.1-201ENST00000579213 173 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AC104662.1-201ENST00000604448 511 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AL354984.3-201ENST00000604803 325 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 OR6R2P-201ENST00000609216 300 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AL138721.1-201ENST00000616756 179 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AL023881.1-201ENST00000621088 301 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC5.21□□□□□ -1.57
CCDC39Q9UFE4 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC5.21□□□□□ -1.57
CCDC39Q9UFE4 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.57
CCDC39Q9UFE4 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.57
CCDC39Q9UFE4 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 AC006971.1-201ENST00000407916 4486 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 RNU6-984P-201ENST00000363236 109 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 RNU6-450P-201ENST00000364654 107 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 RNA5SP151-201ENST00000365632 117 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 Y_RNA.493-201ENST00000384422 102 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 RNU2-36P-201ENST00000410361 191 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 RNU2-29P-201ENST00000410423 189 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 ATG3P1-201ENST00000419507 911 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 AL031736.2-201ENST00000426573 787 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 PSMA6P3-201ENST00000428242 164 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 RNU6-1132P-201ENST00000459214 107 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 AC010683.1-201ENST00000473673 378 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 RPL36AP41-201ENST00000493820 306 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 RNU6-699P-201ENST00000517081 110 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 GNAI2P1-201ENST00000541815 315 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 LARP7P2-201ENST00000575306 125 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 MIR4775-201ENST00000581168 75 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 MIR3128-201ENST00000581957 66 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 SNORD39.3-201ENST00000584451 71 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 AC023043.2-201ENST00000589678 1026 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 uc_338.34-201ENST00000617467 174 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 ASNSP1-201ENST00000518311 1939 ntBASIC5.21□□□□□ -1.58
CCDC39Q9UFE4 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 AL391684.1-202ENST00000641293 1636 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 SNORA62.1-201ENST00000364287 154 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 SNORA71.2-201ENST00000364941 134 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 Y_RNA.515-201ENST00000384535 112 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 RNU6-823P-201ENST00000391042 103 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 AL360182.1-201ENST00000397433 468 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 UBE2V1P2-201ENST00000397758 440 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 NDUFS5P1-201ENST00000405668 289 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 RNU6-101P-201ENST00000410323 104 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 AC012065.2-201ENST00000421295 375 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 RPS12P5-201ENST00000423449 371 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 AL118520.1-201ENST00000450770 291 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 ISCUP1-201ENST00000454451 448 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 RNU7-182P-201ENST00000459009 62 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 PABPC1P3-201ENST00000469174 459 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 UBA52P3-201ENST00000491303 382 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 SLC25A15P5-201ENST00000508033 253 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 MDM2-233ENST00000545204 398 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 AC063949.1-201ENST00000552900 865 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 RPL21P12-201ENST00000559810 515 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 MIR4716-201ENST00000579628 84 ntBASIC5.2□□□□□ -1.58
CCDC39Q9UFE4 MIR3910-1-201ENST00000580936 111 ntBASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms