Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL25A1Q9BXS0 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL25A1Q9BXS0 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
COL25A1Q9BXS0 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.35□□□□□ -1.55
COL25A1Q9BXS0 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.35□□□□□ -1.55
COL25A1Q9BXS0 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
COL25A1Q9BXS0 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL25A1Q9BXS0 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
COL25A1Q9BXS0 AC092747.4-201ENST00000620519 1861 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 U3.3-201ENST00000362986 216 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 Y_RNA.82-201ENST00000363000 102 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 Y_RNA.92-201ENST00000363043 102 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 Y_RNA.235-201ENST00000364412 102 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 Y_RNA.306-201ENST00000365015 102 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 Y_RNA.312-201ENST00000365089 102 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 Y_RNA.322-201ENST00000365151 102 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 RNU6-326P-201ENST00000365480 107 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 MIR1182-201ENST00000408363 97 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 RNU6-516P-201ENST00000411381 104 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 RPEP3-201ENST00000425462 676 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 AL591043.1-201ENST00000432461 424 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 PIGFP3-201ENST00000441918 722 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 Y_RNA.650-201ENST00000459002 102 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 RN7SL443P-201ENST00000464331 290 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 MRPS33P2-201ENST00000507850 322 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 RNY3P16-201ENST00000516338 101 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 Y_RNA.689-201ENST00000516589 107 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 Y_RNA.777-201ENST00000516982 102 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 AC090151.1-201ENST00000520784 730 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 TRAV32-201ENST00000553993 340 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 Y_RNA.771-201ENST00000598668 102 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 ARF4P1-201ENST00000605447 541 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 Y_RNA.789-201ENST00000622480 102 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 AC116667.1-201ENST00000604855 2072 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 CLCA3P-203ENST00000490028 2781 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 AC005725.1-201ENST00000577346 2607 ntBASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL25A1Q9BXS0 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
COL25A1Q9BXS0 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
COL25A1Q9BXS0 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC5.34□□□□□ -1.56
COL25A1Q9BXS0 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.34□□□□□ -1.56
COL25A1Q9BXS0 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 AC009229.4-201ENST00000623854 1947 ntBASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 Y_RNA.218-201ENST00000364218 104 ntBASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 Y_RNA.275-201ENST00000364726 110 ntBASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 RNU6-898P-201ENST00000365627 104 ntBASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 BX510359.2-201ENST00000417920 305 ntBASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 AC005154.2-201ENST00000438110 379 ntBASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 AC073073.1-201ENST00000493920 463 ntBASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 TOMM22P4-201ENST00000511318 336 ntBASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 DEFB108D-201ENST00000527787 222 ntBASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 OR1M4P-201ENST00000589199 287 ntBASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 AC067852.5-201ENST00000589299 310 ntBASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 AL352984.2-202ENST00000613699 155 ntBASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 AC007998.5-201ENST00000622938 237 ntBASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
COL25A1Q9BXS0 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL25A1Q9BXS0 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.32□□□□□ -1.56
COL25A1Q9BXS0 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL25A1Q9BXS0 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC5.32□□□□□ -1.56
COL25A1Q9BXS0 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC5.32□□□□□ -1.56
COL25A1Q9BXS0 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.32□□□□□ -1.56
COL25A1Q9BXS0 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms