Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RPS24P1-201ENST00000438550 371 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 RABEPKP1-201ENST00000440529 1026 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC244505.5-201ENST00000443639 207 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 GAPDHP17-201ENST00000449858 1001 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 U8.18-201ENST00000459285 133 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AL133162.1-201ENST00000463228 453 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 VN1R17P-201ENST00000472048 1090 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
NKX3-1Q99801 RPS4XP13-201ENST00000483219 789 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 HMGB3P15-201ENST00000507326 574 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC109464.2-201ENST00000510242 943 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC114797.1-201ENST00000514003 728 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 AP000857.1-201ENST00000532151 543 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 MED28P6-201ENST00000558776 231 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AGGF1P4-201ENST00000568249 801 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC012213.3-201ENST00000577199 777 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 MIR3146-201ENST00000580367 79 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC012443.1-201ENST00000605605 231 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 RNU6-87P-201ENST00000607561 108 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC004067.1-201ENST00000608733 700 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AP000254.1-201ENST00000609934 520 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC245517.5-201ENST00000611529 162 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC008498.1-201ENST00000613012 531 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC138932.5-201ENST00000617759 563 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 XIST_intron.1-201ENST00000619444 68 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC009268.2-201ENST00000621925 457 ntBASIC3.03□□□□□ -1.92
NKX3-1Q99801 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
NKX3-1Q99801 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.03□□□□□ -1.92
NKX3-1Q99801 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.03□□□□□ -1.92
NKX3-1Q99801 AL513302.2-201ENST00000562313 1842 ntBASIC3.03□□□□□ -1.93
NKX3-1Q99801 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
NKX3-1Q99801 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
NKX3-1Q99801 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.02□□□□□ -1.93
NKX3-1Q99801 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
NKX3-1Q99801 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
NKX3-1Q99801 OR5J1P-201ENST00000313544 939 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 RNA5SP51-201ENST00000364750 119 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 RNU1-39P-201ENST00000383897 165 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 SNORD116-4-201ENST00000384733 96 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 RNA5SP171-201ENST00000391071 115 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 RPL21P17-201ENST00000397467 475 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC3.02□□□□□ -1.93
NKX3-1Q99801 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC3.02□□□□□ -1.93
NKX3-1Q99801 RAB9AP3-201ENST00000412737 573 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 MTND1P21-201ENST00000412991 285 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 HMGB3P23-201ENST00000414981 585 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 UBE2FP1-201ENST00000416536 447 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 AC007283.2-201ENST00000424739 197 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 AC019097.1-201ENST00000424783 735 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.02□□□□□ -1.93
NKX3-1Q99801 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
NKX3-1Q99801 RAB9AP1-201ENST00000449393 573 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 MTND1P9-201ENST00000453775 944 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 RPL23AP31-201ENST00000456160 467 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.02□□□□□ -1.93
NKX3-1Q99801 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.02□□□□□ -1.93
NKX3-1Q99801 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.02□□□□□ -1.93
NKX3-1Q99801 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.02□□□□□ -1.93
NKX3-1Q99801 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
NKX3-1Q99801 AC022483.1-201ENST00000514020 567 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 AC026801.2-201ENST00000515352 425 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 SNORA31.8-201ENST00000516327 108 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 AC093331.1-201ENST00000521474 169 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 IGKV2D-19-201ENST00000523346 262 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.02□□□□□ -1.93
NKX3-1Q99801 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.02□□□□□ -1.93
NKX3-1Q99801 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.02□□□□□ -1.93
NKX3-1Q99801 AC137800.2-201ENST00000574375 120 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 AC011468.4-201ENST00000603942 409 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 AL359999.1-201ENST00000604513 294 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 AC090578.1-201ENST00000604955 591 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.02□□□□□ -1.93
NKX3-1Q99801 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
NKX3-1Q99801 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.02□□□□□ -1.93
NKX3-1Q99801 MIR6130-201ENST00000619419 109 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.02□□□□□ -1.93
NKX3-1Q99801 AC110994.2-201ENST00000635481 492 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
NKX3-1Q99801 AL136164.4-201ENST00000625013 2135 ntBASIC3.02□□□□□ -1.93
NKX3-1Q99801 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
NKX3-1Q99801 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms