Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RNU6-174P-201ENST00000410406 106 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 Z82210.1-201ENST00000440037 231 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 ARL2BPP10-201ENST00000446487 531 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 RPS26P39-201ENST00000469206 341 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 RPL31P13-201ENST00000484151 370 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 AC022447.4-201ENST00000504053 364 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 AC126177.5-201ENST00000549599 178 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 CLMN-206ENST00000556441 452 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 HSPE1P5-201ENST00000561489 272 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 AL645944.1-201ENST00000603857 493 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 AC009314.1-201ENST00000603871 304 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 AC104695.3-201ENST00000604052 296 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 AC018889.1-201ENST00000605372 397 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 MTND5P1-201ENST00000445440 1375 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 USP8P1-201ENST00000494673 3183 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 RN7SKP153-201ENST00000365026 316 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 OR1L6-202ENST00000373684 1044 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 RNU6-26P-201ENST00000383985 107 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 MIR105-1-201ENST00000385222 81 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 OR3A2-201ENST00000408891 1076 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 RNU2-23P-201ENST00000410545 195 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AC079809.1-201ENST00000415468 276 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 RPS15AP10-201ENST00000432472 382 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AL078601.1-201ENST00000444542 271 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AL645939.1-201ENST00000453429 797 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AC133134.1-201ENST00000466800 359 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 RPL17P19-201ENST00000489069 552 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AC069499.1-201ENST00000489433 509 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AC022133.1-201ENST00000490961 571 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 DEFB109F-201ENST00000491870 277 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AK3P2-201ENST00000507976 429 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 FTH1P11-201ENST00000517577 551 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 OR5D17P-201ENST00000531492 978 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 OR8R1P-201ENST00000543943 764 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AC007225.2-201ENST00000562529 256 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 MIR4503-201ENST00000582187 83 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 Z98200.1-201ENST00000607298 470 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 AC087588.2-201ENST00000617667 426 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 MIR6826-201ENST00000617808 98 ntBASIC4.11□□□□□ -1.75
CCDC140Q96MF4 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC140Q96MF4 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC140Q96MF4 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms