Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AC136443.5-201ENST00000603741 370 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AL133215.3-201ENST00000609801 448 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AC090971.5-201ENST00000621102 293 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AC055839.1-201ENST00000634467 498 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 MAPK10-286ENST00000641208 8747 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AC116096.1-201ENST00000566804 2314 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 SCN1A-220ENST00000641603 12506 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 MTND5P1-201ENST00000445440 1375 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 RIOK3P1-201ENST00000418778 1528 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 Y_RNA.145-201ENST00000363527 102 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 RNY1P12-201ENST00000364251 105 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 SNORA23-201ENST00000365128 182 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 RNU6-169P-201ENST00000365336 107 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 SNORA33.2-201ENST00000365413 134 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 SNORA20.2-201ENST00000383922 131 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 Y_RNA.422-201ENST00000384054 114 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 Y_RNA.579-201ENST00000390939 94 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AL356967.1-201ENST00000406305 431 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 U3.35-201ENST00000408405 208 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 NCOR1P3-201ENST00000420479 303 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 RBM6-203ENST00000421682 684 ntTSL 2 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC092017.2-201ENST00000427600 362 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC091390.1-201ENST00000433904 331 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC236972.2-201ENST00000434979 310 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 RPL26P6-201ENST00000440913 438 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 MTCO3P45-201ENST00000443036 613 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC016696.1-201ENST00000446949 318 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AL451050.1-201ENST00000450126 415 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 NANOGP10-201ENST00000453325 895 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 RNU6-329P-201ENST00000459618 107 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC233702.1-201ENST00000482905 502 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC068305.1-201ENST00000497406 726 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 RNA5SP154-201ENST00000516193 111 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 RNU2-58P-201ENST00000516403 183 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 RNU6-1046P-201ENST00000516538 107 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 SNORA31.22-201ENST00000517204 135 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 BTF3P12-201ENST00000519620 469 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC100870.1-201ENST00000522035 505 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 ERHP1-201ENST00000523006 310 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC008489.1-201ENST00000524271 483 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 SUB1P1-201ENST00000524415 382 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC084783.1-201ENST00000565846 910 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AP001330.4-201ENST00000604350 154 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC124312.5-201ENST00000604451 268 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AL356218.2-201ENST00000605264 187 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC103710.3-201ENST00000608157 948 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 uc_338.32-201ENST00000615087 172 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AL136313.1-201ENST00000624804 202 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 MFSD8-242ENST00000641690 4199 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AC139769.1-204ENST00000472297 1931 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 AL359922.3-201ENST00000624779 1670 ntBASIC4.38□□□□□ -1.71
CLIP3Q96DZ5 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 MAPK10-320ENST00000641462 6696 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC126755.2-208ENST00000327792 462 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC138969.1-213ENST00000331436 462 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 Y_RNA.133-201ENST00000363428 110 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 SNORA32.2-201ENST00000384049 122 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 RNU6-463P-201ENST00000384340 107 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AL136116.1-201ENST00000403591 381 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms