Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RPS12P24-201ENST00000412619 387 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AC080125.1-201ENST00000414888 684 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AC068533.1-201ENST00000418542 415 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 BTF3L4P3-201ENST00000418879 476 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 MTND4LP11-201ENST00000422184 280 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 OR52B5P-201ENST00000435337 951 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 DPPA3P1-201ENST00000448050 469 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AL162151.2-201ENST00000448875 158 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 RPL9P32-201ENST00000464118 620 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 RPS23P3-201ENST00000470993 430 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 RPS29P25-201ENST00000481709 171 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AC116353.2-201ENST00000505332 712 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 HIGD1AP14-201ENST00000507617 282 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 RBBP4P6-201ENST00000508098 202 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 RNU1-61P-201ENST00000516107 151 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 RN7SKP66-201ENST00000516681 231 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 OR5B10P-201ENST00000532869 642 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AC092490.3-201ENST00000545370 572 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 MTCO3P24-201ENST00000572729 782 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 MIR4330-201ENST00000579077 105 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AL158032.1-201ENST00000605401 106 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AC022893.3-201ENST00000607665 437 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AC107294.1-201ENST00000609524 467 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 AL020991.1-201ENST00000612314 373 ntBASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC28AQ8IWP9 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.65□□□□□ -1.82
CCDC28AQ8IWP9 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.82
CCDC28AQ8IWP9 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CCDC28AQ8IWP9 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
CCDC28AQ8IWP9 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC3.65□□□□□ -1.82
CCDC28AQ8IWP9 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CCDC28AQ8IWP9 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 UBE2L2-201ENST00000254302 429 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 RNU6-1167P-201ENST00000363227 94 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 SNORD37.1-201ENST00000390968 65 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 EI24P2-201ENST00000397776 1076 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 U3.42-201ENST00000408746 214 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 RNU2-33P-201ENST00000410344 192 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 RNU6-1068P-201ENST00000410958 103 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 OR6C66P-201ENST00000414917 930 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 AC092809.3-201ENST00000415453 231 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 TBCAP2-201ENST00000416175 326 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 AC087650.1-201ENST00000431445 468 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 BTF3P10-201ENST00000433415 495 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 ATP5HP2-201ENST00000433885 485 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 NDUFB4P6-201ENST00000436819 366 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 MTCO3P18-201ENST00000440206 761 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 MTCO2P3-201ENST00000442543 421 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 AL118520.1-201ENST00000450770 291 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 ELOCP23-201ENST00000452014 332 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 RPS27AP17-201ENST00000463344 455 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 RPL21P8-201ENST00000465083 535 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 RN7SL222P-201ENST00000476452 299 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 RPL39P36-201ENST00000490784 156 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 AC072052.1-201ENST00000496556 306 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 AC117522.3-201ENST00000507974 584 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 NAF1-205ENST00000509434 385 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 COX6B1P5-201ENST00000509843 249 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 TTC39CP1-201ENST00000512513 755 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 HIF1AP1-201ENST00000553642 175 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 ZNF192P1-203ENST00000565888 810 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 AC011447.4-201ENST00000587562 111 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 AC093227.2-201ENST00000589357 285 ntBASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC28AQ8IWP9 AC128687.2-201ENST00000609657 566 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms