Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RPL7P20-201ENST00000520308 745 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC4.37□□□□□ -1.71
USP39Q53GS9 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.37□□□□□ -1.71
USP39Q53GS9 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
USP39Q53GS9 AC110588.1-201ENST00000559699 137 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC4.37□□□□□ -1.71
USP39Q53GS9 AL355598.1-201ENST00000604169 202 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 MIR6867-201ENST00000610636 67 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 AL442067.1-201ENST00000613261 223 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 uc_338.15-201ENST00000615470 191 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 AC087588.2-201ENST00000617667 426 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 MIR6891-201ENST00000618788 93 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP39Q53GS9 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
USP39Q53GS9 AC091905.2-201ENST00000623143 306 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.37□□□□□ -1.71
USP39Q53GS9 AC091925.1-201ENST00000623204 462 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 AC067931.1-201ENST00000624190 671 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP39Q53GS9 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP39Q53GS9 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.37□□□□□ -1.71
USP39Q53GS9 MTND4P14-201ENST00000435799 1354 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP39Q53GS9 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
USP39Q53GS9 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP39Q53GS9 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP39Q53GS9 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP39Q53GS9 RNA5SP175-201ENST00000364275 119 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 U3.15-201ENST00000365398 212 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 MDM4-202ENST00000367180 547 ntTSL 3 BASIC4.36□□□□□ -1.71
USP39Q53GS9 RNU6-38P-201ENST00000384085 107 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 RNU6-784P-201ENST00000384330 106 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 AC016769.3-201ENST00000396562 315 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 RNA5SP239-201ENST00000410218 129 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 RN7SKP159-201ENST00000410657 292 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 RPS15AP12-201ENST00000419498 388 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 PDSS1P1-201ENST00000422953 1114 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 AC006946.1-201ENST00000429106 328 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.36□□□□□ -1.71
USP39Q53GS9 AP1S2P1-201ENST00000457344 379 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 RNU6-333P-201ENST00000459117 107 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 RN7SL542P-201ENST00000467147 294 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 AC006512.1-201ENST00000468816 291 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 AL135752.1-201ENST00000479477 471 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 AC012158.1-204ENST00000483430 465 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 RN7SL691P-201ENST00000494487 301 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 AL592156.1-201ENST00000508758 304 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 AC004062.1-201ENST00000509926 645 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 PTP4A1P4-201ENST00000512479 322 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 RNU4-29P-201ENST00000515943 174 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 SNORD27.1-201ENST00000516319 72 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
USP39Q53GS9 SNRPGP18-201ENST00000553000 214 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC4.36□□□□□ -1.71
USP39Q53GS9 AL117187.1-201ENST00000555482 181 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 RN7SL600P-201ENST00000581811 299 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 MIR3149-201ENST00000584629 83 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC4.36□□□□□ -1.71
USP39Q53GS9 AC010201.1-201ENST00000605051 540 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 AP000654.2-201ENST00000605633 586 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC4.36□□□□□ -1.71
USP39Q53GS9 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.36□□□□□ -1.71
USP39Q53GS9 AC244517.12-201ENST00000623581 663 ntBASIC4.36□□□□□ -1.71
USP39Q53GS9 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP39Q53GS9 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.36□□□□□ -1.71
USP39Q53GS9 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.36□□□□□ -1.71
USP39Q53GS9 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP39Q53GS9 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
USP39Q53GS9 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP39Q53GS9 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.35□□□□□ -1.71
USP39Q53GS9 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC4.35□□□□□ -1.71
USP39Q53GS9 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.35□□□□□ -1.71
USP39Q53GS9 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
USP39Q53GS9 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.35□□□□□ -1.71
USP39Q53GS9 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
USP39Q53GS9 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
USP39Q53GS9 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.35□□□□□ -1.71
USP39Q53GS9 OR1S2-201ENST00000302592 978 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
USP39Q53GS9 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
USP39Q53GS9 U3.12-201ENST00000364498 214 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 Y_RNA.367-201ENST00000365544 101 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
USP39Q53GS9 RNU1-63P-201ENST00000383902 164 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 SNORA51.6-201ENST00000384151 125 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 Y_RNA.452-201ENST00000384202 108 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 RNU6-505P-201ENST00000384427 107 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 PTMAP2-201ENST00000397627 327 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 RNA5SP146-201ENST00000410743 123 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 RNU6-1304P-201ENST00000411374 106 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 RPS20P14-201ENST00000412545 360 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 RPS12P23-201ENST00000419579 400 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC4.35□□□□□ -1.71
USP39Q53GS9 COX6B1P7-201ENST00000430845 235 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 RPL23AP25-201ENST00000430973 463 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 YWHAZP8-201ENST00000436935 731 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.35□□□□□ -1.71
USP39Q53GS9 AL137792.2-201ENST00000443484 235 ntBASIC4.35□□□□□ -1.71
USP39Q53GS9 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC4.35□□□□□ -1.71
USP39Q53GS9 Y_RNA.635-201ENST00000459041 101 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms