Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
MSH6P52701 AC090116.1-201ENST00000615679 446 ntBASIC2.97□□□□□ -1.93
MSH6P52701 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
MSH6P52701 AC006249.1-201ENST00000621223 471 ntBASIC2.97□□□□□ -1.93
MSH6P52701 CYP3A51P-201ENST00000633513 256 ntBASIC2.97□□□□□ -1.93
MSH6P52701 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC2.96□□□□□ -1.94
MSH6P52701 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.96□□□□□ -1.94
MSH6P52701 RNU6-263P-201ENST00000363811 107 ntBASIC2.96□□□□□ -1.94
MSH6P52701 RNU6-236P-201ENST00000363886 106 ntBASIC2.96□□□□□ -1.94
MSH6P52701 RNU1-51P-201ENST00000365345 176 ntBASIC2.96□□□□□ -1.94
MSH6P52701 Y_RNA.493-201ENST00000384422 102 ntBASIC2.96□□□□□ -1.94
MSH6P52701 MIR217-201ENST00000384817 110 ntBASIC2.96□□□□□ -1.94
MSH6P52701 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC2.96□□□□□ -1.94
MSH6P52701 AL035405.1-201ENST00000400795 710 ntBASIC2.96□□□□□ -1.94
MSH6P52701 RAD23BP2-201ENST00000416003 1207 ntBASIC2.96□□□□□ -1.94
MSH6P52701 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC2.96□□□□□ -1.94
MSH6P52701 AC241584.1-201ENST00000438469 1241 ntBASIC2.96□□□□□ -1.94
MSH6P52701 ARF4P4-201ENST00000439608 520 ntBASIC2.96□□□□□ -1.94
MSH6P52701 TAF9P1-201ENST00000445421 515 ntBASIC2.96□□□□□ -1.94
MSH6P52701 AC004022.1-201ENST00000447766 1066 ntBASIC2.96□□□□□ -1.94
MSH6P52701 NDUFA5P7-201ENST00000452914 242 ntBASIC2.96□□□□□ -1.94
MSH6P52701 TAF9P2-201ENST00000454958 515 ntBASIC2.96□□□□□ -1.94
MSH6P52701 SNRPGP9-201ENST00000456025 225 ntBASIC2.96□□□□□ -1.94
MSH6P52701 AC027673.1-201ENST00000456245 405 ntBASIC2.96□□□□□ -1.94
MSH6P52701 MTCO3P2-201ENST00000457365 171 ntBASIC2.96□□□□□ -1.94
MSH6P52701 AC098799.2-201ENST00000509466 868 ntBASIC2.96□□□□□ -1.94
MSH6P52701 RNU6-885P-201ENST00000516607 104 ntBASIC2.96□□□□□ -1.94
MSH6P52701 ARL2BPP5-201ENST00000523141 481 ntBASIC2.96□□□□□ -1.94
MSH6P52701 AP003385.6-201ENST00000531603 374 ntBASIC2.96□□□□□ -1.94
MSH6P52701 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.96□□□□□ -1.94
MSH6P52701 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC2.96□□□□□ -1.94
MSH6P52701 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC2.96□□□□□ -1.94
MSH6P52701 AC090330.1-201ENST00000588646 764 ntBASIC2.96□□□□□ -1.94
MSH6P52701 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.96□□□□□ -1.94
MSH6P52701 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.96□□□□□ -1.94
MSH6P52701 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC2.96□□□□□ -1.94
MSH6P52701 AC025588.3-201ENST00000604182 274 ntBASIC2.96□□□□□ -1.94
MSH6P52701 AP005137.2-201ENST00000609238 400 ntBASIC2.96□□□□□ -1.94
MSH6P52701 AC111188.2-201ENST00000529697 1387 ntBASIC2.96□□□□□ -1.94
MSH6P52701 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.96□□□□□ -1.94
MSH6P52701 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
MSH6P52701 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
MSH6P52701 RNU6-600P-201ENST00000362524 99 ntBASIC2.95□□□□□ -1.94
MSH6P52701 RNU6-839P-201ENST00000363347 108 ntBASIC2.95□□□□□ -1.94
MSH6P52701 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC2.95□□□□□ -1.94
MSH6P52701 OR5H15-201ENST00000383696 930 ntBASIC2.95□□□□□ -1.94
MSH6P52701 RNU6-837P-201ENST00000391056 108 ntBASIC2.95□□□□□ -1.94
MSH6P52701 AC019129.1-201ENST00000403786 261 ntBASIC2.95□□□□□ -1.94
MSH6P52701 RNU4-78P-201ENST00000410940 126 ntBASIC2.95□□□□□ -1.94
MSH6P52701 AL133384.1-201ENST00000412744 351 ntBASIC2.95□□□□□ -1.94
MSH6P52701 FNDC3CP-201ENST00000420795 1155 ntBASIC2.95□□□□□ -1.94
MSH6P52701 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC2.95□□□□□ -1.94
MSH6P52701 MTCYBP32-201ENST00000427945 1084 ntBASIC2.95□□□□□ -1.94
MSH6P52701 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.95□□□□□ -1.94
MSH6P52701 RPL23AP16-201ENST00000441715 421 ntBASIC2.95□□□□□ -1.94
MSH6P52701 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.95□□□□□ -1.94
MSH6P52701 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.95□□□□□ -1.94
MSH6P52701 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.95□□□□□ -1.94
MSH6P52701 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC2.95□□□□□ -1.94
MSH6P52701 snoZ278.1-201ENST00000517059 112 ntBASIC2.95□□□□□ -1.94
MSH6P52701 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.95□□□□□ -1.94
MSH6P52701 AC087894.1-201ENST00000538359 518 ntBASIC2.95□□□□□ -1.94
MSH6P52701 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.95□□□□□ -1.94
MSH6P52701 REXO2-218ENST00000544827 880 ntTSL 3 BASIC2.95□□□□□ -1.94
MSH6P52701 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
MSH6P52701 AC093519.1-201ENST00000566109 298 ntBASIC2.95□□□□□ -1.94
MSH6P52701 AC090666.1-201ENST00000578241 445 ntBASIC2.95□□□□□ -1.94
MSH6P52701 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC2.95□□□□□ -1.94
MSH6P52701 AC008507.2-201ENST00000588402 1176 ntBASIC2.95□□□□□ -1.94
MSH6P52701 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC2.95□□□□□ -1.94
MSH6P52701 VN1R87P-201ENST00000596706 487 ntBASIC2.95□□□□□ -1.94
MSH6P52701 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC2.95□□□□□ -1.94
MSH6P52701 GAS5-AS1-201ENST00000602767 694 ntBASIC2.95□□□□□ -1.94
MSH6P52701 AL133393.1-201ENST00000603277 287 ntBASIC2.95□□□□□ -1.94
MSH6P52701 DPRXP5-201ENST00000604662 539 ntBASIC2.95□□□□□ -1.94
MSH6P52701 AP000238.1-201ENST00000608759 426 ntBASIC2.95□□□□□ -1.94
MSH6P52701 AC092574.1-201ENST00000609771 420 ntBASIC2.95□□□□□ -1.94
MSH6P52701 AC124016.2-201ENST00000610058 665 ntBASIC2.95□□□□□ -1.94
MSH6P52701 AL512506.2-201ENST00000624472 458 ntBASIC2.95□□□□□ -1.94
MSH6P52701 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.95□□□□□ -1.94
MSH6P52701 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.95□□□□□ -1.94
MSH6P52701 AC004520.1-201ENST00000608362 1413 ntBASIC2.95□□□□□ -1.94
MSH6P52701 AC002546.1-201ENST00000588041 2504 ntBASIC2.95□□□□□ -1.94
MSH6P52701 DBF4P1-201ENST00000412976 1892 ntBASIC2.94□□□□□ -1.94
MSH6P52701 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.94□□□□□ -1.94
MSH6P52701 RNU6-989P-201ENST00000362756 107 ntBASIC2.94□□□□□ -1.94
MSH6P52701 MIR518E-201ENST00000385252 88 ntBASIC2.94□□□□□ -1.94
MSH6P52701 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
MSH6P52701 SAR1AP2-201ENST00000392696 594 ntBASIC2.94□□□□□ -1.94
MSH6P52701 AL354719.1-201ENST00000406535 843 ntBASIC2.94□□□□□ -1.94
MSH6P52701 BLOC1S2P1-201ENST00000428431 301 ntBASIC2.94□□□□□ -1.94
MSH6P52701 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC2.94□□□□□ -1.94
MSH6P52701 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.94□□□□□ -1.94
MSH6P52701 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC2.94□□□□□ -1.94
MSH6P52701 TRIM60P18-201ENST00000441518 828 ntBASIC2.94□□□□□ -1.94
MSH6P52701 MRPL42P4-201ENST00000453267 443 ntBASIC2.94□□□□□ -1.94
MSH6P52701 MTCO1P42-201ENST00000457379 726 ntBASIC2.94□□□□□ -1.94
MSH6P52701 PABPC1P3-201ENST00000469174 459 ntBASIC2.94□□□□□ -1.94
MSH6P52701 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC2.94□□□□□ -1.94
MSH6P52701 AC108078.2-201ENST00000510750 236 ntBASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms