Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AF186996.5-201ENST00000418098 904 ntBASIC5.01□□□□□ -1.61
LIG3P49916 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC5.01□□□□□ -1.61
LIG3P49916 EIF4EP1-201ENST00000422311 642 ntBASIC5.01□□□□□ -1.61
LIG3P49916 RPS29P9-201ENST00000440360 171 ntBASIC5.01□□□□□ -1.61
LIG3P49916 AC091685.2-201ENST00000454924 864 ntBASIC5.01□□□□□ -1.61
LIG3P49916 RPS3AP41-201ENST00000462701 778 ntBASIC5.01□□□□□ -1.61
LIG3P49916 AC010469.1-201ENST00000463864 576 ntBASIC5.01□□□□□ -1.61
LIG3P49916 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
LIG3P49916 RN7SL441P-201ENST00000492388 296 ntBASIC5.01□□□□□ -1.61
LIG3P49916 AC104136.1-201ENST00000512969 394 ntBASIC5.01□□□□□ -1.61
LIG3P49916 RNU6-976P-201ENST00000516086 111 ntBASIC5.01□□□□□ -1.61
LIG3P49916 RNU4ATAC7P-201ENST00000516280 125 ntBASIC5.01□□□□□ -1.61
LIG3P49916 AC090151.1-201ENST00000520784 730 ntBASIC5.01□□□□□ -1.61
LIG3P49916 AC012339.2-201ENST00000523996 453 ntBASIC5.01□□□□□ -1.61
LIG3P49916 CYCSP27-201ENST00000527643 293 ntBASIC5.01□□□□□ -1.61
LIG3P49916 NDUFB4P11-201ENST00000560510 395 ntBASIC5.01□□□□□ -1.61
LIG3P49916 BNIP3P5-201ENST00000562290 498 ntBASIC5.01□□□□□ -1.61
LIG3P49916 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC5.01□□□□□ -1.61
LIG3P49916 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.01□□□□□ -1.61
LIG3P49916 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
LIG3P49916 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.01□□□□□ -1.61
LIG3P49916 AL049539.1-201ENST00000611964 459 ntBASIC5.01□□□□□ -1.61
LIG3P49916 MIR6128-201ENST00000615528 109 ntBASIC5.01□□□□□ -1.61
LIG3P49916 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC5.01□□□□□ -1.61
LIG3P49916 AC022418.1-201ENST00000624118 445 ntBASIC5.01□□□□□ -1.61
LIG3P49916 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.01□□□□□ -1.61
LIG3P49916 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
LIG3P49916 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
LIG3P49916 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
LIG3P49916 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC5□□□□□ -1.61
LIG3P49916 KPNA2P1-201ENST00000458289 1591 ntBASIC5□□□□□ -1.61
LIG3P49916 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC5□□□□□ -1.61
LIG3P49916 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC5□□□□□ -1.61
LIG3P49916 HSPA8P4-201ENST00000511877 1920 ntBASIC5□□□□□ -1.61
LIG3P49916 AL049555.1-201ENST00000562834 1933 ntBASIC5□□□□□ -1.61
LIG3P49916 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
LIG3P49916 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
LIG3P49916 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5□□□□□ -1.61
LIG3P49916 RN7SKP224-201ENST00000364140 325 ntBASIC5□□□□□ -1.61
LIG3P49916 RNU6-76P-201ENST00000384060 104 ntBASIC5□□□□□ -1.61
LIG3P49916 AL445189.1-201ENST00000405722 338 ntBASIC5□□□□□ -1.61
LIG3P49916 AL080315.1-201ENST00000406055 466 ntBASIC5□□□□□ -1.61
LIG3P49916 EIF4A1P3-201ENST00000411521 244 ntBASIC5□□□□□ -1.61
LIG3P49916 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC5□□□□□ -1.61
LIG3P49916 COX6B1P1-201ENST00000415962 213 ntBASIC5□□□□□ -1.61
LIG3P49916 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC5□□□□□ -1.61
LIG3P49916 AC008264.1-201ENST00000447612 367 ntBASIC5□□□□□ -1.61
LIG3P49916 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5□□□□□ -1.61
LIG3P49916 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC5□□□□□ -1.61
LIG3P49916 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5□□□□□ -1.61
LIG3P49916 MRPS33P2-201ENST00000507850 322 ntBASIC5□□□□□ -1.61
LIG3P49916 AC116337.1-201ENST00000509680 687 ntBASIC5□□□□□ -1.61
LIG3P49916 RNU6-323P-201ENST00000521915 107 ntBASIC5□□□□□ -1.61
LIG3P49916 DNAJC8P1-201ENST00000554535 372 ntBASIC5□□□□□ -1.61
LIG3P49916 ATP5J2P6-201ENST00000565203 266 ntBASIC5□□□□□ -1.61
LIG3P49916 SNORD84-203ENST00000584275 78 ntBASIC5□□□□□ -1.61
LIG3P49916 AC010680.4-201ENST00000605334 543 ntBASIC5□□□□□ -1.61
LIG3P49916 AC015813.4-201ENST00000610469 179 ntBASIC5□□□□□ -1.61
LIG3P49916 AC087385.3-201ENST00000620477 187 ntBASIC5□□□□□ -1.61
LIG3P49916 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC5□□□□□ -1.61
LIG3P49916 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
LIG3P49916 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5□□□□□ -1.61
LIG3P49916 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC5□□□□□ -1.61
LIG3P49916 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
LIG3P49916 RNU6-288P-201ENST00000363690 104 ntBASIC4.99□□□□□ -1.61
LIG3P49916 RNU6-14P-201ENST00000384630 106 ntBASIC4.99□□□□□ -1.61
LIG3P49916 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC4.99□□□□□ -1.61
LIG3P49916 RNU4-25P-201ENST00000410569 230 ntBASIC4.99□□□□□ -1.61
LIG3P49916 AL160275.3-201ENST00000423876 471 ntBASIC4.99□□□□□ -1.61
LIG3P49916 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
LIG3P49916 HMGB1P27-201ENST00000431429 603 ntBASIC4.99□□□□□ -1.61
LIG3P49916 AL591212.2-201ENST00000433923 257 ntBASIC4.99□□□□□ -1.61
LIG3P49916 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.99□□□□□ -1.61
LIG3P49916 AL772161.1-201ENST00000439130 476 ntBASIC4.99□□□□□ -1.61
LIG3P49916 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC4.99□□□□□ -1.61
LIG3P49916 AC112498.1-201ENST00000444401 332 ntBASIC4.99□□□□□ -1.61
LIG3P49916 MTND5P22-201ENST00000458380 195 ntBASIC4.99□□□□□ -1.61
LIG3P49916 MIR2053-201ENST00000459295 91 ntBASIC4.99□□□□□ -1.61
LIG3P49916 RPL37P6-201ENST00000460682 294 ntBASIC4.99□□□□□ -1.61
LIG3P49916 RPL5P30-201ENST00000465511 891 ntBASIC4.99□□□□□ -1.61
LIG3P49916 AC104472.2-201ENST00000469035 601 ntBASIC4.99□□□□□ -1.61
LIG3P49916 AC117503.1-201ENST00000472241 394 ntBASIC4.99□□□□□ -1.61
LIG3P49916 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC4.99□□□□□ -1.61
LIG3P49916 RNU6-1046P-201ENST00000516538 107 ntBASIC4.99□□□□□ -1.61
LIG3P49916 RNU6-1332P-201ENST00000516666 104 ntBASIC4.99□□□□□ -1.61
LIG3P49916 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.99□□□□□ -1.61
LIG3P49916 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.99□□□□□ -1.61
LIG3P49916 ERHP1-201ENST00000523006 310 ntBASIC4.99□□□□□ -1.61
LIG3P49916 AC008489.1-201ENST00000524271 483 ntBASIC4.99□□□□□ -1.61
LIG3P49916 AC021006.3-201ENST00000530771 192 ntBASIC4.99□□□□□ -1.61
LIG3P49916 AL121603.1-201ENST00000553815 142 ntBASIC4.99□□□□□ -1.61
LIG3P49916 EDDM3DP-201ENST00000554692 434 ntBASIC4.99□□□□□ -1.61
LIG3P49916 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.99□□□□□ -1.61
LIG3P49916 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC4.99□□□□□ -1.61
LIG3P49916 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.99□□□□□ -1.61
LIG3P49916 AC087783.2-201ENST00000605070 562 ntBASIC4.99□□□□□ -1.61
LIG3P49916 AP000654.2-201ENST00000605633 586 ntBASIC4.99□□□□□ -1.61
LIG3P49916 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.99□□□□□ -1.61
LIG3P49916 PISRT1.1-201ENST00000616930 107 ntBASIC4.99□□□□□ -1.61
LIG3P49916 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms