Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 Y_RNA.598-201ENST00000410480 95 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AC126124.2-201ENST00000413542 321 ntBASIC2.98□□□□□ -1.93
CDX1P47902 NDUFB4P5-201ENST00000415445 361 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CDX1P47902 BTF3L4P3-201ENST00000418879 476 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC2.98□□□□□ -1.93
CDX1P47902 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC2.98□□□□□ -1.93
CDX1P47902 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.98□□□□□ -1.93
CDX1P47902 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AC244035.1-201ENST00000430042 390 ntBASIC2.98□□□□□ -1.93
CDX1P47902 RPL23AP69-201ENST00000431134 458 ntBASIC2.98□□□□□ -1.93
CDX1P47902 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.98□□□□□ -1.93
CDX1P47902 TRIM60P18-201ENST00000441518 828 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC2.98□□□□□ -1.93
CDX1P47902 NOTCH2P1-201ENST00000443481 624 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AL133547.1-201ENST00000448546 220 ntBASIC2.98□□□□□ -1.93
CDX1P47902 SNORA84-201ENST00000459229 133 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AC034236.1-201ENST00000469891 373 ntBASIC2.98□□□□□ -1.93
CDX1P47902 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.98□□□□□ -1.93
CDX1P47902 KC877373.1-201ENST00000479066 408 ntBASIC2.98□□□□□ -1.93
CDX1P47902 LARP1BP2-201ENST00000486594 519 ntBASIC2.98□□□□□ -1.93
CDX1P47902 TRBV12-2-201ENST00000489763 344 ntBASIC2.98□□□□□ -1.93
CDX1P47902 KCTD9P5-201ENST00000504141 1170 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AC119751.5-201ENST00000514077 770 ntBASIC2.98□□□□□ -1.93
CDX1P47902 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.98□□□□□ -1.93
CDX1P47902 RNU6-928P-201ENST00000516876 104 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.98□□□□□ -1.93
CDX1P47902 AC107934.1-201ENST00000522215 217 ntBASIC2.98□□□□□ -1.93
CDX1P47902 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CDX1P47902 ATP5F1P5-201ENST00000526403 760 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AC022878.1-201ENST00000530684 149 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AP000867.2-201ENST00000532468 320 ntBASIC2.98□□□□□ -1.93
CDX1P47902 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC2.98□□□□□ -1.93
CDX1P47902 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC2.98□□□□□ -1.93
CDX1P47902 AC034105.3-201ENST00000565294 442 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.98□□□□□ -1.93
CDX1P47902 MIR3118-1-201ENST00000581787 76 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC2.98□□□□□ -1.93
CDX1P47902 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.98□□□□□ -1.93
CDX1P47902 MIR4293-201ENST00000584305 78 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC2.98□□□□□ -1.93
CDX1P47902 AC112191.3-201ENST00000604371 277 ntBASIC2.98□□□□□ -1.93
CDX1P47902 SNORA51-201ENST00000606420 132 ntBASIC2.98□□□□□ -1.93
CDX1P47902 RNU6-87P-201ENST00000607561 108 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AC006338.1-201ENST00000618453 749 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AC073530.2-201ENST00000623987 261 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AC025048.6-202ENST00000627667 438 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.98□□□□□ -1.93
CDX1P47902 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.98□□□□□ -1.93
CDX1P47902 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC2.98□□□□□ -1.93
CDX1P47902 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
CDX1P47902 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC2.98□□□□□ -1.93
CDX1P47902 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CDX1P47902 MAPK10-362ENST00000641864 4484 ntBASIC2.98□□□□□ -1.93
CDX1P47902 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CDX1P47902 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CDX1P47902 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CDX1P47902 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC2.97□□□□□ -1.93
CDX1P47902 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC2.97□□□□□ -1.93
CDX1P47902 AC092104.1-201ENST00000497346 1441 ntBASIC2.97□□□□□ -1.93
CDX1P47902 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
CDX1P47902 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
CDX1P47902 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.97□□□□□ -1.93
CDX1P47902 RNU6-1284P-201ENST00000363701 100 ntBASIC2.97□□□□□ -1.93
CDX1P47902 MIR200C-201ENST00000384980 68 ntBASIC2.97□□□□□ -1.93
CDX1P47902 RNA5SP31-201ENST00000411144 127 ntBASIC2.97□□□□□ -1.93
CDX1P47902 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC2.97□□□□□ -1.93
CDX1P47902 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC2.97□□□□□ -1.93
CDX1P47902 NPM1P11-201ENST00000417106 855 ntBASIC2.97□□□□□ -1.93
CDX1P47902 RPS15AP12-201ENST00000419498 388 ntBASIC2.97□□□□□ -1.93
CDX1P47902 CYCSP46-201ENST00000423569 204 ntBASIC2.97□□□□□ -1.93
CDX1P47902 TRIAP1P1-201ENST00000427062 225 ntBASIC2.97□□□□□ -1.93
CDX1P47902 AC018644.1-201ENST00000429934 551 ntBASIC2.97□□□□□ -1.93
CDX1P47902 IGKV1OR9-2-201ENST00000431378 277 ntBASIC2.97□□□□□ -1.93
CDX1P47902 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC2.97□□□□□ -1.93
CDX1P47902 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.97□□□□□ -1.93
CDX1P47902 AC020550.1-201ENST00000447385 163 ntBASIC2.97□□□□□ -1.93
CDX1P47902 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC2.97□□□□□ -1.93
CDX1P47902 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.97□□□□□ -1.93
CDX1P47902 RPS4XP2-201ENST00000458402 793 ntBASIC2.97□□□□□ -1.93
CDX1P47902 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.97□□□□□ -1.93
CDX1P47902 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.97□□□□□ -1.93
CDX1P47902 RPS20P22-201ENST00000473700 357 ntBASIC2.97□□□□□ -1.93
CDX1P47902 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.97□□□□□ -1.93
CDX1P47902 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.97□□□□□ -1.93
CDX1P47902 FABP5P5-201ENST00000515537 406 ntBASIC2.97□□□□□ -1.93
CDX1P47902 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC2.97□□□□□ -1.93
CDX1P47902 SUMO2P20-201ENST00000520803 283 ntBASIC2.97□□□□□ -1.93
CDX1P47902 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC2.97□□□□□ -1.93
CDX1P47902 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.97□□□□□ -1.93
CDX1P47902 HMGB1P14-201ENST00000557424 591 ntBASIC2.97□□□□□ -1.93
CDX1P47902 TRAV28-201ENST00000557548 323 ntBASIC2.97□□□□□ -1.93
CDX1P47902 AC087499.8-201ENST00000578406 226 ntBASIC2.97□□□□□ -1.93
CDX1P47902 MIR5187-201ENST00000583479 76 ntBASIC2.97□□□□□ -1.93
CDX1P47902 MIR3158-1-201ENST00000583596 81 ntBASIC2.97□□□□□ -1.93
CDX1P47902 U73023.1-201ENST00000603134 700 ntBASIC2.97□□□□□ -1.93
CDX1P47902 IGKV1OR2-6-201ENST00000603485 277 ntBASIC2.97□□□□□ -1.93
CDX1P47902 BX664608.1-201ENST00000610519 487 ntBASIC2.97□□□□□ -1.93
CDX1P47902 AC138749.5-201ENST00000611461 208 ntBASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms