Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AC098799.2-201ENST00000509466 868 ntBASIC1.32□□□□□ -2.2
HTTP42858 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC1.32□□□□□ -2.2
HTTP42858 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC1.32□□□□□ -2.2
HTTP42858 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.32□□□□□ -2.2
HTTP42858 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC1.32□□□□□ -2.2
HTTP42858 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
HTTP42858 AC068700.1-201ENST00000565862 3754 ntBASIC1.31□□□□□ -2.2
HTTP42858 AP002907.1-201ENST00000606361 1430 ntBASIC1.31□□□□□ -2.2
HTTP42858 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
HTTP42858 SUMO2P12-201ENST00000405924 140 ntBASIC1.31□□□□□ -2.2
HTTP42858 AL357520.1-201ENST00000441557 453 ntBASIC1.31□□□□□ -2.2
HTTP42858 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.31□□□□□ -2.2
HTTP42858 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC1.31□□□□□ -2.2
HTTP42858 AC116447.1-201ENST00000613153 453 ntBASIC1.31□□□□□ -2.2
HTTP42858 RNA5SP239-201ENST00000410218 129 ntBASIC1.31□□□□□ -2.2
HTTP42858 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC1.31□□□□□ -2.2
HTTP42858 AP000873.1-201ENST00000463987 400 ntBASIC1.31□□□□□ -2.2
HTTP42858 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC1.31□□□□□ -2.2
HTTP42858 VN1R107P-201ENST00000601784 209 ntBASIC1.31□□□□□ -2.2
HTTP42858 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
HTTP42858 AC135776.4-201ENST00000624300 1904 ntBASIC1.31□□□□□ -2.2
HTTP42858 Y_RNA.60-201ENST00000362831 98 ntBASIC1.31□□□□□ -2.2
HTTP42858 RNU6-35P-201ENST00000384530 107 ntBASIC1.31□□□□□ -2.2
HTTP42858 AC110792.2-201ENST00000510278 224 ntBASIC1.31□□□□□ -2.2
HTTP42858 ZNF734P-201ENST00000419494 1534 ntBASIC1.3□□□□□ -2.2
HTTP42858 Y_RNA.85-201ENST00000363014 111 ntBASIC1.3□□□□□ -2.2
HTTP42858 AC073264.1-201ENST00000411508 416 ntBASIC1.3□□□□□ -2.2
HTTP42858 AL357078.2-201ENST00000416486 427 ntBASIC1.3□□□□□ -2.2
HTTP42858 AC009965.2-201ENST00000425328 970 ntBASIC1.3□□□□□ -2.2
HTTP42858 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.3□□□□□ -2.2
HTTP42858 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC1.3□□□□□ -2.2
HTTP42858 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC1.3□□□□□ -2.2
HTTP42858 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC1.3□□□□□ -2.2
HTTP42858 SNORA62.2-201ENST00000364672 152 ntBASIC1.3□□□□□ -2.2
HTTP42858 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC1.3□□□□□ -2.2
HTTP42858 DNAJC8P1-201ENST00000554535 372 ntBASIC1.3□□□□□ -2.2
HTTP42858 AC011890.2-201ENST00000613393 294 ntBASIC1.3□□□□□ -2.2
HTTP42858 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
HTTP42858 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC1.29□□□□□ -2.2
HTTP42858 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC1.29□□□□□ -2.2
HTTP42858 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.29□□□□□ -2.2
HTTP42858 HMGN2P20-201ENST00000437531 273 ntBASIC1.29□□□□□ -2.2
HTTP42858 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC1.29□□□□□ -2.2
HTTP42858 AC021755.4-201ENST00000616620 456 ntBASIC1.29□□□□□ -2.2
HTTP42858 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
HTTP42858 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
HTTP42858 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC1.29□□□□□ -2.2
HTTP42858 RSL24D1P2-201ENST00000445584 366 ntBASIC1.29□□□□□ -2.2
HTTP42858 RPL23AP35-201ENST00000451906 501 ntBASIC1.29□□□□□ -2.2
HTTP42858 AC006499.2-201ENST00000513470 337 ntBASIC1.29□□□□□ -2.2
HTTP42858 AC006338.1-201ENST00000618453 749 ntBASIC1.29□□□□□ -2.2
HTTP42858 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC1.29□□□□□ -2.2
HTTP42858 AL121594.5-201ENST00000631724 573 ntBASIC1.29□□□□□ -2.2
HTTP42858 RFC1-217ENST00000639695 867 ntTSL 5 BASIC1.29□□□□□ -2.2
HTTP42858 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC1.29□□□□□ -2.2
HTTP42858 AL139109.1-201ENST00000455491 297 ntBASIC1.29□□□□□ -2.2
HTTP42858 AC113155.1-201ENST00000511141 769 ntBASIC1.29□□□□□ -2.2
HTTP42858 AC067852.7-201ENST00000623270 535 ntBASIC1.29□□□□□ -2.2
HTTP42858 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC1.28□□□□□ -2.2
HTTP42858 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
HTTP42858 AL353718.1-201ENST00000451028 517 ntBASIC1.28□□□□□ -2.2
HTTP42858 AC093801.2-201ENST00000503966 1050 ntBASIC1.28□□□□□ -2.2
HTTP42858 AC009127.3-201ENST00000570531 403 ntBASIC1.28□□□□□ -2.2
HTTP42858 AL020996.3-201ENST00000606617 222 ntBASIC1.28□□□□□ -2.2
HTTP42858 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC1.28□□□□□ -2.2
HTTP42858 AC025263.3-201ENST00000622965 1396 ntBASIC1.28□□□□□ -2.2
HTTP42858 USP9YP33-201ENST00000412220 421 ntBASIC1.28□□□□□ -2.2
HTTP42858 AL590233.1-201ENST00000430017 456 ntBASIC1.28□□□□□ -2.2
HTTP42858 USP9YP35-201ENST00000435696 412 ntBASIC1.28□□□□□ -2.2
HTTP42858 OR4V1P-201ENST00000525394 1140 ntBASIC1.28□□□□□ -2.2
HTTP42858 AP004242.1-201ENST00000533701 349 ntBASIC1.28□□□□□ -2.2
HTTP42858 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
HTTP42858 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC1.27□□□□□ -2.21
HTTP42858 AC074140.1-201ENST00000621617 208 ntBASIC1.27□□□□□ -2.21
HTTP42858 AP000676.4-201ENST00000624659 623 ntBASIC1.27□□□□□ -2.21
HTTP42858 MIR6715B-201ENST00000637172 77 ntBASIC1.27□□□□□ -2.21
HTTP42858 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.27□□□□□ -2.21
HTTP42858 RNA5SP354-201ENST00000391247 136 ntBASIC1.27□□□□□ -2.21
HTTP42858 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC1.27□□□□□ -2.21
HTTP42858 AC121761.2-201ENST00000617300 689 ntBASIC1.27□□□□□ -2.21
HTTP42858 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC1.27□□□□□ -2.21
HTTP42858 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC1.27□□□□□ -2.21
HTTP42858 U6.98-201ENST00000637157 84 ntBASIC1.27□□□□□ -2.21
HTTP42858 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC1.26□□□□□ -2.21
HTTP42858 Y_RNA.167-201ENST00000363735 109 ntBASIC1.26□□□□□ -2.21
HTTP42858 U8.9-201ENST00000365667 134 ntBASIC1.26□□□□□ -2.21
HTTP42858 SNRPEP10-201ENST00000420249 274 ntBASIC1.26□□□□□ -2.21
HTTP42858 AL512661.1-201ENST00000434586 1253 ntBASIC1.26□□□□□ -2.21
HTTP42858 OR9N1P-202ENST00000494289 481 ntBASIC1.26□□□□□ -2.21
HTTP42858 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC1.26□□□□□ -2.21
HTTP42858 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.26□□□□□ -2.21
HTTP42858 MIR338-201ENST00000636369 67 ntBASIC1.26□□□□□ -2.21
HTTP42858 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC1.26□□□□□ -2.21
HTTP42858 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC1.26□□□□□ -2.21
HTTP42858 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC1.26□□□□□ -2.21
HTTP42858 AC016769.3-201ENST00000396562 315 ntBASIC1.26□□□□□ -2.21
HTTP42858 TXNP7-201ENST00000406296 293 ntBASIC1.26□□□□□ -2.21
HTTP42858 Z86062.1-201ENST00000406773 777 ntBASIC1.26□□□□□ -2.21
HTTP42858 HMGN2P35-201ENST00000412164 270 ntBASIC1.26□□□□□ -2.21
HTTP42858 SNORA31.26-201ENST00000517250 137 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms