Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.19□□□□□ -1.74
COL3A1P02461 MTND5P4-201ENST00000514978 288 ntBASIC4.19□□□□□ -1.74
COL3A1P02461 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.19□□□□□ -1.74
COL3A1P02461 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC4.19□□□□□ -1.74
COL3A1P02461 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC4.19□□□□□ -1.74
COL3A1P02461 EIF4BP1-201ENST00000554881 351 ntBASIC4.19□□□□□ -1.74
COL3A1P02461 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC4.19□□□□□ -1.74
COL3A1P02461 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC4.19□□□□□ -1.74
COL3A1P02461 PRELID3BP8-201ENST00000604148 295 ntBASIC4.19□□□□□ -1.74
COL3A1P02461 RN7SL853P-201ENST00000617250 223 ntBASIC4.19□□□□□ -1.74
COL3A1P02461 CDR1-202ENST00000625883 1485 ntBASIC4.19□□□□□ -1.74
COL3A1P02461 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.19□□□□□ -1.74
COL3A1P02461 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL3A1P02461 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL3A1P02461 AP003122.5-201ENST00000527668 3766 ntBASIC4.19□□□□□ -1.74
COL3A1P02461 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL3A1P02461 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC4.19□□□□□ -1.74
COL3A1P02461 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL3A1P02461 FARSBP1-201ENST00000435808 1778 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL3A1P02461 RNU6-462P-201ENST00000362659 105 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL3A1P02461 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
COL3A1P02461 SNRPEP2-201ENST00000397592 279 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 RPL23AP47-201ENST00000408017 460 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC4.18□□□□□ -1.74
COL3A1P02461 BX295541.1-201ENST00000417774 250 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC4.18□□□□□ -1.74
COL3A1P02461 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC4.18□□□□□ -1.74
COL3A1P02461 RPL37P4-201ENST00000448908 268 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 GAPDHP17-201ENST00000449858 1001 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL3A1P02461 BX248409.1-201ENST00000455497 255 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.18□□□□□ -1.74
COL3A1P02461 AP001992.1-205ENST00000462248 379 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 AC004801.2-202ENST00000463559 283 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 RNA5SP216-201ENST00000516111 123 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 RNU6-1004P-201ENST00000516584 111 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 Y_RNA.693-201ENST00000516641 110 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC4.18□□□□□ -1.74
COL3A1P02461 AC104027.1-201ENST00000521887 300 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 HSPA8P13-201ENST00000523715 472 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.18□□□□□ -1.74
COL3A1P02461 AC018552.3-201ENST00000567416 561 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC4.18□□□□□ -1.74
COL3A1P02461 AC011712.1-201ENST00000588959 234 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 AC112187.2-201ENST00000604345 283 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 AL360085.1-201ENST00000604713 532 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.18□□□□□ -1.74
COL3A1P02461 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC4.18□□□□□ -1.74
COL3A1P02461 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL3A1P02461 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL3A1P02461 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL3A1P02461 SAGE4P-201ENST00000442271 3381 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL3A1P02461 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL3A1P02461 OR4G11P-202ENST00000642116 1414 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 MTND4P27-201ENST00000450813 1354 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
COL3A1P02461 RPL23AP57-201ENST00000332361 466 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 Y_RNA.1-201ENST00000352915 104 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 Y_RNA.409-201ENST00000383990 98 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 Y_RNA.431-201ENST00000384086 102 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 RNU6-1103P-201ENST00000384150 107 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 Y_RNA.481-201ENST00000384373 102 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 SNORA48.5-201ENST00000391143 135 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 VN1R36P-201ENST00000414936 291 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 RPS12P23-201ENST00000419579 400 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 AL353678.1-201ENST00000422735 741 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 USP9YP36-201ENST00000424581 829 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC4.18□□□□□ -1.74
COL3A1P02461 AC093716.1-201ENST00000435923 377 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 PGBD4P3-201ENST00000440731 581 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 AC016696.1-201ENST00000446949 318 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC4.18□□□□□ -1.74
COL3A1P02461 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC4.18□□□□□ -1.74
COL3A1P02461 RPS29P26-201ENST00000477483 171 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 RPL7L1P13-201ENST00000511702 739 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 MTCO1P30-201ENST00000515244 580 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 RNA5SP341-201ENST00000516261 117 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 RN7SKP60-201ENST00000516985 239 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC4.18□□□□□ -1.74
COL3A1P02461 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC4.18□□□□□ -1.74
COL3A1P02461 AP002812.4-201ENST00000532139 286 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC4.18□□□□□ -1.74
COL3A1P02461 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.18□□□□□ -1.74
COL3A1P02461 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC4.18□□□□□ -1.74
COL3A1P02461 MIR5697-201ENST00000578045 78 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 MIR3682-201ENST00000581338 84 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 AC012507.3-201ENST00000603556 477 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 AL033523.1-201ENST00000605153 153 ntBASIC4.18□□□□□ -1.74
COL3A1P02461 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL3A1P02461 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.17□□□□□ -1.74
COL3A1P02461 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL3A1P02461 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.17□□□□□ -1.74
COL3A1P02461 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.17□□□□□ -1.74
COL3A1P02461 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL3A1P02461 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL3A1P02461 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC4.17□□□□□ -1.74
COL3A1P02461 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 150 ms