Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC88BA6NC98 RNU6-1-201ENST00000383898 107 ntBASIC2.2□□□□□ -2.06
CCDC88BA6NC98 RNU6-42P-201ENST00000384165 107 ntBASIC2.2□□□□□ -2.06
CCDC88BA6NC98 RNU6-36P-201ENST00000384172 107 ntBASIC2.2□□□□□ -2.06
CCDC88BA6NC98 RNU6-4P-201ENST00000384205 107 ntBASIC2.2□□□□□ -2.06
CCDC88BA6NC98 RNU6-5P-201ENST00000384238 107 ntBASIC2.2□□□□□ -2.06
CCDC88BA6NC98 RNU6-3P-201ENST00000384314 107 ntBASIC2.2□□□□□ -2.06
CCDC88BA6NC98 RNU6-2-201ENST00000384627 107 ntBASIC2.2□□□□□ -2.06
CCDC88BA6NC98 RNU6-9-201ENST00000384776 107 ntBASIC2.2□□□□□ -2.06
CCDC88BA6NC98 RNU6-33P-201ENST00000384793 107 ntBASIC2.2□□□□□ -2.06
CCDC88BA6NC98 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC88BA6NC98 CALM1P1-201ENST00000442082 433 ntBASIC2.2□□□□□ -2.06
CCDC88BA6NC98 CALM1P2-201ENST00000452941 448 ntBASIC2.2□□□□□ -2.06
CCDC88BA6NC98 BZW1P2-201ENST00000473537 826 ntBASIC2.2□□□□□ -2.06
CCDC88BA6NC98 AC023050.1-201ENST00000498198 304 ntBASIC2.2□□□□□ -2.06
CCDC88BA6NC98 AC009901.1-201ENST00000506703 541 ntBASIC2.2□□□□□ -2.06
CCDC88BA6NC98 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC2.2□□□□□ -2.06
CCDC88BA6NC98 RNU6-6P-201ENST00000606623 107 ntBASIC2.2□□□□□ -2.06
CCDC88BA6NC98 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
CCDC88BA6NC98 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
CCDC88BA6NC98 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
CCDC88BA6NC98 RPS12P24-201ENST00000412619 387 ntBASIC2.2□□□□□ -2.06
CCDC88BA6NC98 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.2□□□□□ -2.06
CCDC88BA6NC98 RPS3AP22-201ENST00000488297 769 ntBASIC2.2□□□□□ -2.06
CCDC88BA6NC98 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC88BA6NC98 DNAJC8P1-201ENST00000554535 372 ntBASIC2.2□□□□□ -2.06
CCDC88BA6NC98 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC88BA6NC98 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC88BA6NC98 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC88BA6NC98 SNORA51.2-201ENST00000364595 132 ntBASIC2.19□□□□□ -2.06
CCDC88BA6NC98 RNU2-71P-201ENST00000411395 189 ntBASIC2.19□□□□□ -2.06
CCDC88BA6NC98 CKS1BP5-201ENST00000434172 273 ntBASIC2.19□□□□□ -2.06
CCDC88BA6NC98 AC113155.1-201ENST00000511141 769 ntBASIC2.19□□□□□ -2.06
CCDC88BA6NC98 RN7SKP49-201ENST00000516675 260 ntBASIC2.19□□□□□ -2.06
CCDC88BA6NC98 MIR3199-1-201ENST00000582434 88 ntBASIC2.19□□□□□ -2.06
CCDC88BA6NC98 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.19□□□□□ -2.06
CCDC88BA6NC98 AL078603.1-201ENST00000603824 313 ntBASIC2.19□□□□□ -2.06
CCDC88BA6NC98 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.19□□□□□ -2.06
CCDC88BA6NC98 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC88BA6NC98 NR1H5P-201ENST00000452683 1377 ntBASIC2.18□□□□□ -2.06
CCDC88BA6NC98 AP000648.3-201ENST00000623539 4507 ntBASIC2.18□□□□□ -2.06
CCDC88BA6NC98 SLC9B1P2-201ENST00000398120 1184 ntBASIC2.18□□□□□ -2.06
CCDC88BA6NC98 RNU2-25P-201ENST00000411041 191 ntBASIC2.18□□□□□ -2.06
CCDC88BA6NC98 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC88BA6NC98 AL136380.1-201ENST00000447970 162 ntBASIC2.18□□□□□ -2.06
CCDC88BA6NC98 MTND1P18-201ENST00000448191 573 ntBASIC2.18□□□□□ -2.06
CCDC88BA6NC98 MTCO2P32-201ENST00000514865 403 ntBASIC2.18□□□□□ -2.06
CCDC88BA6NC98 IGKV2D-36-201ENST00000518643 226 ntBASIC2.18□□□□□ -2.06
CCDC88BA6NC98 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC88BA6NC98 AC073413.2-201ENST00000604332 360 ntBASIC2.18□□□□□ -2.06
CCDC88BA6NC98 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
CCDC88BA6NC98 SNORA67.1-201ENST00000364749 141 ntBASIC2.17□□□□□ -2.06
CCDC88BA6NC98 MIR92A2-201ENST00000385299 75 ntBASIC2.17□□□□□ -2.06
CCDC88BA6NC98 AC007098.1-201ENST00000420122 367 ntBASIC2.17□□□□□ -2.06
CCDC88BA6NC98 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC88BA6NC98 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2.17□□□□□ -2.06
CCDC88BA6NC98 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC88BA6NC98 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC2.17□□□□□ -2.06
CCDC88BA6NC98 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC88BA6NC98 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC88BA6NC98 AP000907.2-201ENST00000530827 353 ntBASIC2.17□□□□□ -2.06
CCDC88BA6NC98 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.17□□□□□ -2.06
CCDC88BA6NC98 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC2.17□□□□□ -2.06
CCDC88BA6NC98 AC008121.3-201ENST00000618726 433 ntBASIC2.17□□□□□ -2.06
CCDC88BA6NC98 PVT1_3.1-201ENST00000620853 95 ntBASIC2.17□□□□□ -2.06
CCDC88BA6NC98 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.17□□□□□ -2.06
CCDC88BA6NC98 RNU6-600P-201ENST00000362524 99 ntBASIC2.16□□□□□ -2.06
CCDC88BA6NC98 RNY1-201ENST00000364228 113 ntBASIC2.16□□□□□ -2.06
CCDC88BA6NC98 AL356057.2-201ENST00000403318 432 ntBASIC2.16□□□□□ -2.06
CCDC88BA6NC98 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.16□□□□□ -2.06
CCDC88BA6NC98 RPS26P56-201ENST00000444468 240 ntBASIC2.16□□□□□ -2.06
CCDC88BA6NC98 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC88BA6NC98 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC2.16□□□□□ -2.06
CCDC88BA6NC98 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC2.16□□□□□ -2.06
CCDC88BA6NC98 FO393415.2-201ENST00000480085 343 ntBASIC2.16□□□□□ -2.06
CCDC88BA6NC98 ARL2BPP4-201ENST00000506854 471 ntBASIC2.16□□□□□ -2.06
CCDC88BA6NC98 AF131216.2-201ENST00000512316 564 ntBASIC2.16□□□□□ -2.06
CCDC88BA6NC98 MTATP6P3-201ENST00000581686 676 ntBASIC2.16□□□□□ -2.06
CCDC88BA6NC98 AC013553.2-201ENST00000604244 589 ntBASIC2.16□□□□□ -2.06
CCDC88BA6NC98 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC2.16□□□□□ -2.06
CCDC88BA6NC98 AP003122.6-201ENST00000623831 495 ntBASIC2.16□□□□□ -2.06
CCDC88BA6NC98 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.16□□□□□ -2.06
CCDC88BA6NC98 AL354685.2-201ENST00000448218 1447 ntBASIC2.16□□□□□ -2.06
CCDC88BA6NC98 AC130650.2-201ENST00000618736 2403 ntBASIC2.15□□□□□ -2.06
CCDC88BA6NC98 MIR520E-201ENST00000384867 87 ntBASIC2.15□□□□□ -2.06
CCDC88BA6NC98 MIR153-1-201ENST00000384914 90 ntBASIC2.15□□□□□ -2.06
CCDC88BA6NC98 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC2.15□□□□□ -2.06
CCDC88BA6NC98 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
CCDC88BA6NC98 RPS23P3-201ENST00000470993 430 ntBASIC2.15□□□□□ -2.06
CCDC88BA6NC98 RN7SKP234-201ENST00000517173 224 ntBASIC2.15□□□□□ -2.06
CCDC88BA6NC98 IGLVVI-22-1-201ENST00000521183 211 ntBASIC2.15□□□□□ -2.06
CCDC88BA6NC98 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.15□□□□□ -2.06
CCDC88BA6NC98 AL137100.2-201ENST00000555786 315 ntBASIC2.15□□□□□ -2.06
CCDC88BA6NC98 AC097504.2-201ENST00000608088 454 ntBASIC2.15□□□□□ -2.06
CCDC88BA6NC98 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC2.15□□□□□ -2.06
CCDC88BA6NC98 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.06
CCDC88BA6NC98 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC88BA6NC98 CD24P4-201ENST00000382840 243 ntBASIC2.14□□□□□ -2.07
CCDC88BA6NC98 RN7SKP51-201ENST00000410781 304 ntBASIC2.14□□□□□ -2.07
CCDC88BA6NC98 IFNA20P-201ENST00000436840 528 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms