Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim40Q3UWA4 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim40Q3UWA4 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC15.34■□□□□ 0.05
Trim40Q3UWA4 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim40Q3UWA4 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Trim40Q3UWA4 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim40Q3UWA4 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim40Q3UWA4 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim40Q3UWA4 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim40Q3UWA4 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim40Q3UWA4 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim40Q3UWA4 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim40Q3UWA4 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim40Q3UWA4 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Trim40Q3UWA4 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim40Q3UWA4 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
Trim40Q3UWA4 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.05
Trim40Q3UWA4 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Trim40Q3UWA4 Ntrk2-205ENSMUST00000224402 2284 ntBASIC15.33■□□□□ 0.05
Trim40Q3UWA4 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trim40Q3UWA4 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trim40Q3UWA4 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Trim40Q3UWA4 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Trim40Q3UWA4 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC15.33■□□□□ 0.04
Trim40Q3UWA4 AC154412.1-201ENSMUST00000226540 2786 ntBASIC15.33■□□□□ 0.04
Trim40Q3UWA4 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim40Q3UWA4 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC15.33■□□□□ 0.04
Trim40Q3UWA4 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC15.33■□□□□ 0.04
Trim40Q3UWA4 AC166341.7-201ENSMUST00000221698 126 ntBASIC15.33■□□□□ 0.04
Trim40Q3UWA4 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim40Q3UWA4 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Trim40Q3UWA4 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim40Q3UWA4 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim40Q3UWA4 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim40Q3UWA4 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Gm42473-201ENSMUST00000201056 2291 ntBASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim40Q3UWA4 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Gm45203-201ENSMUST00000206384 1831 ntBASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Gm37812-201ENSMUST00000195216 2475 ntBASIC15.31■□□□□ 0.04
Trim40Q3UWA4 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 65.2 ms