Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
Scn11aQ9R053 Gm14121-201ENSMUST00000121441 1380 ntBASIC28.47■■■□□ 2.15
Scn11aQ9R053 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC28.47■■■□□ 2.15
Scn11aQ9R053 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Scn11aQ9R053 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Scn11aQ9R053 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Scn11aQ9R053 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC28.46■■■□□ 2.15
Scn11aQ9R053 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
Scn11aQ9R053 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC28.44■■■□□ 2.14
Scn11aQ9R053 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
Scn11aQ9R053 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC28.43■■■□□ 2.14
Scn11aQ9R053 AC122317.2-201ENSMUST00000218708 1248 ntBASIC28.42■■■□□ 2.14
Scn11aQ9R053 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Scn11aQ9R053 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
Scn11aQ9R053 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC28.42■■■□□ 2.14
Scn11aQ9R053 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC28.42■■■□□ 2.14
Scn11aQ9R053 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Scn11aQ9R053 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC28.41■■■□□ 2.14
Scn11aQ9R053 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
Scn11aQ9R053 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC28.39■■■□□ 2.14
Scn11aQ9R053 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Scn11aQ9R053 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
Scn11aQ9R053 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
Scn11aQ9R053 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
Scn11aQ9R053 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC28.39■■■□□ 2.13
Scn11aQ9R053 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC28.38■■■□□ 2.13
Scn11aQ9R053 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Scn11aQ9R053 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
Scn11aQ9R053 Scarna2-201ENSMUST00000157560 414 ntBASIC28.37■■■□□ 2.13
Scn11aQ9R053 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Scn11aQ9R053 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC28.36■■■□□ 2.13
Scn11aQ9R053 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Scn11aQ9R053 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC28.35■■■□□ 2.13
Scn11aQ9R053 Gm22567-201ENSMUST00000175542 342 ntBASIC28.35■■■□□ 2.13
Scn11aQ9R053 Gm9806-201ENSMUST00000051080 552 ntBASIC28.34■■■□□ 2.13
Scn11aQ9R053 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Scn11aQ9R053 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC28.34■■■□□ 2.13
Scn11aQ9R053 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Scn11aQ9R053 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC28.33■■■□□ 2.13
Scn11aQ9R053 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC28.33■■■□□ 2.13
Scn11aQ9R053 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC28.33■■■□□ 2.13
Scn11aQ9R053 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Scn11aQ9R053 Gm13889-201ENSMUST00000099689 1386 ntBASIC28.32■■■□□ 2.12
Scn11aQ9R053 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
Scn11aQ9R053 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC28.32■■■□□ 2.12
Scn11aQ9R053 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
Scn11aQ9R053 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC28.31■■■□□ 2.12
Scn11aQ9R053 Gm11687-201ENSMUST00000118911 886 ntBASIC28.31■■■□□ 2.12
Scn11aQ9R053 Gm12366-201ENSMUST00000121722 873 ntBASIC28.31■■■□□ 2.12
Scn11aQ9R053 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC28.31■■■□□ 2.12
Scn11aQ9R053 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC28.31■■■□□ 2.12
Scn11aQ9R053 Gm5786-201ENSMUST00000085368 882 ntBASIC28.31■■■□□ 2.12
Scn11aQ9R053 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Scn11aQ9R053 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Scn11aQ9R053 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC28.29■■■□□ 2.12
Scn11aQ9R053 Gm4799-201ENSMUST00000095396 657 ntBASIC28.29■■■□□ 2.12
Scn11aQ9R053 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC28.29■■■□□ 2.12
Scn11aQ9R053 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC28.28■■■□□ 2.12
Scn11aQ9R053 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Scn11aQ9R053 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Scn11aQ9R053 Gm12818-201ENSMUST00000117562 1349 ntBASIC28.27■■■□□ 2.12
Scn11aQ9R053 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Scn11aQ9R053 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
Scn11aQ9R053 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Scn11aQ9R053 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC28.24■■■□□ 2.11
Scn11aQ9R053 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Scn11aQ9R053 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Scn11aQ9R053 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Scn11aQ9R053 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Scn11aQ9R053 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC28.22■■■□□ 2.11
Scn11aQ9R053 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC28.22■■■□□ 2.11
Scn11aQ9R053 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC28.22■■■□□ 2.11
Scn11aQ9R053 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Scn11aQ9R053 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Scn11aQ9R053 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC28.22■■■□□ 2.11
Scn11aQ9R053 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC28.21■■■□□ 2.11
Scn11aQ9R053 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC28.21■■■□□ 2.11
Scn11aQ9R053 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
Scn11aQ9R053 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
Scn11aQ9R053 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Scn11aQ9R053 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC28.2■■■□□ 2.11
Scn11aQ9R053 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC28.19■■■□□ 2.1
Scn11aQ9R053 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
Scn11aQ9R053 AC151971.4-201ENSMUST00000214717 704 ntBASIC28.19■■■□□ 2.1
Scn11aQ9R053 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Scn11aQ9R053 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Scn11aQ9R053 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC28.19■■■□□ 2.1
Scn11aQ9R053 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Scn11aQ9R053 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Scn11aQ9R053 Gm16437-201ENSMUST00000025669 507 ntBASIC28.18■■■□□ 2.1
Scn11aQ9R053 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Scn11aQ9R053 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Scn11aQ9R053 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Scn11aQ9R053 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Scn11aQ9R053 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC28.17■■■□□ 2.1
Scn11aQ9R053 Gm27502-201ENSMUST00000183495 199 ntBASIC28.16■■■□□ 2.1
Scn11aQ9R053 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Scn11aQ9R053 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC28.15■■■□□ 2.1
Scn11aQ9R053 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Scn11aQ9R053 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms