Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Lsm1Q8VC85 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Lsm1Q8VC85 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Lsm1Q8VC85 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Lsm1Q8VC85 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Lsm1Q8VC85 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Lsm1Q8VC85 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Lsm1Q8VC85 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Lsm1Q8VC85 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Lsm1Q8VC85 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Lsm1Q8VC85 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Lsm1Q8VC85 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC22.28■■□□□ 1.16
Lsm1Q8VC85 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Lsm1Q8VC85 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
Lsm1Q8VC85 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
Lsm1Q8VC85 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC22.27■■□□□ 1.16
Lsm1Q8VC85 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Lsm1Q8VC85 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC22.26■■□□□ 1.15
Lsm1Q8VC85 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Lsm1Q8VC85 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Lsm1Q8VC85 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Lsm1Q8VC85 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Lsm1Q8VC85 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Lsm1Q8VC85 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
Lsm1Q8VC85 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Lsm1Q8VC85 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Lsm1Q8VC85 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Lsm1Q8VC85 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Lsm1Q8VC85 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
Lsm1Q8VC85 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Lsm1Q8VC85 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
Lsm1Q8VC85 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Lsm1Q8VC85 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC22.23■■□□□ 1.15
Lsm1Q8VC85 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
Lsm1Q8VC85 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Lsm1Q8VC85 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Lsm1Q8VC85 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
Lsm1Q8VC85 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
Lsm1Q8VC85 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Lsm1Q8VC85 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
Lsm1Q8VC85 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Lsm1Q8VC85 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
Lsm1Q8VC85 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Lsm1Q8VC85 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
Lsm1Q8VC85 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Lsm1Q8VC85 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
Lsm1Q8VC85 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Lsm1Q8VC85 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Lsm1Q8VC85 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Lsm1Q8VC85 Gm14121-201ENSMUST00000121441 1380 ntBASIC22.2■■□□□ 1.14
Lsm1Q8VC85 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
Lsm1Q8VC85 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC22.2■■□□□ 1.14
Lsm1Q8VC85 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
Lsm1Q8VC85 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Lsm1Q8VC85 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Lsm1Q8VC85 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Lsm1Q8VC85 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Lsm1Q8VC85 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Lsm1Q8VC85 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Lsm1Q8VC85 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Lsm1Q8VC85 Il17rd-202ENSMUST00000223942 2186 ntBASIC22.17■■□□□ 1.14
Lsm1Q8VC85 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Lsm1Q8VC85 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
Lsm1Q8VC85 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC22.16■■□□□ 1.14
Lsm1Q8VC85 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Lsm1Q8VC85 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Lsm1Q8VC85 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Lsm1Q8VC85 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Lsm1Q8VC85 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Lsm1Q8VC85 Nkain2-201ENSMUST00000092602 558 ntBASIC22.14■■□□□ 1.13
Lsm1Q8VC85 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
Lsm1Q8VC85 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
Lsm1Q8VC85 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Lsm1Q8VC85 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Lsm1Q8VC85 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC22.12■■□□□ 1.13
Lsm1Q8VC85 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Lsm1Q8VC85 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC22.12■■□□□ 1.13
Lsm1Q8VC85 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
Lsm1Q8VC85 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Lsm1Q8VC85 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
Lsm1Q8VC85 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC22.1■■□□□ 1.13
Lsm1Q8VC85 Gm42809-201ENSMUST00000198429 1138 ntBASIC22.1■■□□□ 1.13
Lsm1Q8VC85 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Lsm1Q8VC85 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC22.09■■□□□ 1.13
Lsm1Q8VC85 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
Lsm1Q8VC85 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC22.08■■□□□ 1.13
Lsm1Q8VC85 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Lsm1Q8VC85 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
Lsm1Q8VC85 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Lsm1Q8VC85 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Lsm1Q8VC85 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
Lsm1Q8VC85 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Lsm1Q8VC85 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Lsm1Q8VC85 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Lsm1Q8VC85 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Lsm1Q8VC85 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
Lsm1Q8VC85 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Lsm1Q8VC85 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Lsm1Q8VC85 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Lsm1Q8VC85 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Retrieved 100 of 76,532 protein–RNA pairs in 9.8 ms