Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
ShhQ62226 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
ShhQ62226 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC21.52■■□□□ 1.04
ShhQ62226 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ShhQ62226 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
ShhQ62226 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ShhQ62226 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
ShhQ62226 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ShhQ62226 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC21.51■■□□□ 1.03
ShhQ62226 Gm30023-201ENSMUST00000197970 889 ntBASIC21.51■■□□□ 1.03
ShhQ62226 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ShhQ62226 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
ShhQ62226 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
ShhQ62226 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ShhQ62226 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
ShhQ62226 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ShhQ62226 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
ShhQ62226 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
ShhQ62226 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ShhQ62226 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
ShhQ62226 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ShhQ62226 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ShhQ62226 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ShhQ62226 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ShhQ62226 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC21.46■■□□□ 1.03
ShhQ62226 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC21.46■■□□□ 1.03
ShhQ62226 Gm12366-201ENSMUST00000121722 873 ntBASIC21.46■■□□□ 1.03
ShhQ62226 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC21.46■■□□□ 1.03
ShhQ62226 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC21.46■■□□□ 1.03
ShhQ62226 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ShhQ62226 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC21.46■■□□□ 1.03
ShhQ62226 Gm5786-201ENSMUST00000085368 882 ntBASIC21.46■■□□□ 1.03
ShhQ62226 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
ShhQ62226 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.45■■□□□ 1.02
ShhQ62226 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC21.45■■□□□ 1.02
ShhQ62226 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
ShhQ62226 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
ShhQ62226 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
ShhQ62226 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
ShhQ62226 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
ShhQ62226 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
ShhQ62226 AC153890.1-201ENSMUST00000220021 2469 ntBASIC21.45■■□□□ 1.02
ShhQ62226 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
ShhQ62226 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC21.44■■□□□ 1.02
ShhQ62226 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
ShhQ62226 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ShhQ62226 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ShhQ62226 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
ShhQ62226 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ShhQ62226 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
ShhQ62226 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
ShhQ62226 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
ShhQ62226 Gm11687-201ENSMUST00000118911 886 ntBASIC21.42■■□□□ 1.02
ShhQ62226 Scarna2-201ENSMUST00000157560 414 ntBASIC21.42■■□□□ 1.02
ShhQ62226 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
ShhQ62226 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
ShhQ62226 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ShhQ62226 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ShhQ62226 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC21.4■■□□□ 1.02
ShhQ62226 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC21.4■■□□□ 1.02
ShhQ62226 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
ShhQ62226 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
ShhQ62226 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
ShhQ62226 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
ShhQ62226 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
ShhQ62226 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
ShhQ62226 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
ShhQ62226 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ShhQ62226 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ShhQ62226 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC21.38■■□□□ 1.01
ShhQ62226 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.38■■□□□ 1.01
ShhQ62226 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
ShhQ62226 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ShhQ62226 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ShhQ62226 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ShhQ62226 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ShhQ62226 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ShhQ62226 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
ShhQ62226 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC21.36■■□□□ 1.01
ShhQ62226 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
ShhQ62226 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
ShhQ62226 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ShhQ62226 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
ShhQ62226 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ShhQ62226 Gm9806-201ENSMUST00000051080 552 ntBASIC21.35■■□□□ 1.01
ShhQ62226 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ShhQ62226 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC21.35■■□□□ 1.01
ShhQ62226 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
ShhQ62226 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
ShhQ62226 Particl-201ENSMUST00000205370 1560 ntBASIC21.34■■□□□ 1.01
ShhQ62226 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
ShhQ62226 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
ShhQ62226 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
ShhQ62226 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC21.33■■□□□ 1
ShhQ62226 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC21.33■■□□□ 1
ShhQ62226 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ShhQ62226 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ShhQ62226 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC21.32■■□□□ 1
ShhQ62226 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ShhQ62226 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 14.4 ms