Protein–RNA interactions for Protein: Q5R1I4

Trav6-2, T cell receptor alpha variable 6-2 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-2Q5R1I4 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trav6-2Q5R1I4 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trav6-2Q5R1I4 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC20.68■□□□□ 0.9
Trav6-2Q5R1I4 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC20.68■□□□□ 0.9
Trav6-2Q5R1I4 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trav6-2Q5R1I4 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trav6-2Q5R1I4 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trav6-2Q5R1I4 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC20.67■□□□□ 0.9
Trav6-2Q5R1I4 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC20.67■□□□□ 0.9
Trav6-2Q5R1I4 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trav6-2Q5R1I4 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trav6-2Q5R1I4 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.67■□□□□ 0.9
Trav6-2Q5R1I4 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Trav6-2Q5R1I4 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Trav6-2Q5R1I4 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trav6-2Q5R1I4 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trav6-2Q5R1I4 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trav6-2Q5R1I4 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trav6-2Q5R1I4 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC20.65■□□□□ 0.9
Trav6-2Q5R1I4 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trav6-2Q5R1I4 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trav6-2Q5R1I4 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
Trav6-2Q5R1I4 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trav6-2Q5R1I4 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trav6-2Q5R1I4 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Trav6-2Q5R1I4 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Trav6-2Q5R1I4 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trav6-2Q5R1I4 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Trav6-2Q5R1I4 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
Trav6-2Q5R1I4 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Trav6-2Q5R1I4 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trav6-2Q5R1I4 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trav6-2Q5R1I4 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trav6-2Q5R1I4 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Trav6-2Q5R1I4 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC20.6■□□□□ 0.89
Trav6-2Q5R1I4 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC20.6■□□□□ 0.89
Trav6-2Q5R1I4 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trav6-2Q5R1I4 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Trav6-2Q5R1I4 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trav6-2Q5R1I4 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Trav6-2Q5R1I4 Gm9812-201ENSMUST00000061934 968 ntBASIC20.59■□□□□ 0.89
Trav6-2Q5R1I4 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trav6-2Q5R1I4 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trav6-2Q5R1I4 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trav6-2Q5R1I4 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Trav6-2Q5R1I4 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
Trav6-2Q5R1I4 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trav6-2Q5R1I4 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trav6-2Q5R1I4 Gm7332-201ENSMUST00000118351 454 ntBASIC20.57■□□□□ 0.88
Trav6-2Q5R1I4 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trav6-2Q5R1I4 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trav6-2Q5R1I4 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trav6-2Q5R1I4 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trav6-2Q5R1I4 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trav6-2Q5R1I4 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trav6-2Q5R1I4 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trav6-2Q5R1I4 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Trav6-2Q5R1I4 Gm27502-201ENSMUST00000183495 199 ntBASIC20.55■□□□□ 0.88
Trav6-2Q5R1I4 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trav6-2Q5R1I4 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trav6-2Q5R1I4 Gm9910-201ENSMUST00000195385 1550 ntBASIC20.55■□□□□ 0.88
Trav6-2Q5R1I4 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Trav6-2Q5R1I4 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC20.54■□□□□ 0.88
Trav6-2Q5R1I4 AC122317.2-201ENSMUST00000218708 1248 ntBASIC20.54■□□□□ 0.88
Trav6-2Q5R1I4 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC20.54■□□□□ 0.88
Trav6-2Q5R1I4 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trav6-2Q5R1I4 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trav6-2Q5R1I4 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trav6-2Q5R1I4 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trav6-2Q5R1I4 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trav6-2Q5R1I4 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trav6-2Q5R1I4 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trav6-2Q5R1I4 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trav6-2Q5R1I4 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
Trav6-2Q5R1I4 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trav6-2Q5R1I4 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trav6-2Q5R1I4 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trav6-2Q5R1I4 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trav6-2Q5R1I4 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trav6-2Q5R1I4 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trav6-2Q5R1I4 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Trav6-2Q5R1I4 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trav6-2Q5R1I4 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trav6-2Q5R1I4 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trav6-2Q5R1I4 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trav6-2Q5R1I4 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trav6-2Q5R1I4 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trav6-2Q5R1I4 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trav6-2Q5R1I4 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trav6-2Q5R1I4 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Trav6-2Q5R1I4 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC20.49■□□□□ 0.87
Trav6-2Q5R1I4 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.49■□□□□ 0.87
Trav6-2Q5R1I4 Gm37847-201ENSMUST00000192163 1497 ntBASIC20.49■□□□□ 0.87
Trav6-2Q5R1I4 Gm31748-201ENSMUST00000194938 1497 ntBASIC20.49■□□□□ 0.87
Trav6-2Q5R1I4 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trav6-2Q5R1I4 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trav6-2Q5R1I4 Gm6206-201ENSMUST00000133472 2199 ntBASIC20.48■□□□□ 0.87
Trav6-2Q5R1I4 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trav6-2Q5R1I4 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trav6-2Q5R1I4 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms