Protein–RNA interactions for Protein: P41245

Mmp9, Matrix metalloproteinase-9, mousemouse

Predictions only

Length 730 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Mmp9P41245 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Mmp9P41245 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Mmp9P41245 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Mmp9P41245 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Mmp9P41245 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Mmp9P41245 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Mmp9P41245 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Mmp9P41245 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Mmp9P41245 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC19.33■□□□□ 0.69
Mmp9P41245 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Mmp9P41245 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Mmp9P41245 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Mmp9P41245 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Mmp9P41245 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Mmp9P41245 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Mmp9P41245 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Mmp9P41245 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Mmp9P41245 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Mmp9P41245 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Mmp9P41245 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Mmp9P41245 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Mmp9P41245 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
Mmp9P41245 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Mmp9P41245 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC19.32■□□□□ 0.68
Mmp9P41245 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Mmp9P41245 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Mmp9P41245 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Mmp9P41245 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Mmp9P41245 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Mmp9P41245 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Mmp9P41245 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC19.3■□□□□ 0.68
Mmp9P41245 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Mmp9P41245 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Mmp9P41245 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC19.29■□□□□ 0.68
Mmp9P41245 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Mmp9P41245 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Mmp9P41245 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Mmp9P41245 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Mmp9P41245 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Mmp9P41245 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Mmp9P41245 Gm6277-202ENSMUST00000224036 2779 ntBASIC19.28■□□□□ 0.68
Mmp9P41245 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Mmp9P41245 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Mmp9P41245 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Mmp9P41245 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Mmp9P41245 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Mmp9P41245 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Mmp9P41245 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Mmp9P41245 Gm45855-201ENSMUST00000212546 880 ntBASIC19.27■□□□□ 0.68
Mmp9P41245 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Mmp9P41245 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Mmp9P41245 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Mmp9P41245 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Mmp9P41245 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Mmp9P41245 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC19.27■□□□□ 0.67
Mmp9P41245 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Mmp9P41245 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Mmp9P41245 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Mmp9P41245 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Mmp9P41245 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Mmp9P41245 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Mmp9P41245 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Mmp9P41245 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Mmp9P41245 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Mmp9P41245 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Mmp9P41245 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
Mmp9P41245 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Mmp9P41245 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Mmp9P41245 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Mmp9P41245 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Mmp9P41245 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Mmp9P41245 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Mmp9P41245 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Mmp9P41245 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Mmp9P41245 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Mmp9P41245 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Mmp9P41245 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Mmp9P41245 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Mmp9P41245 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Mmp9P41245 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Mmp9P41245 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Mmp9P41245 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Mmp9P41245 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Mmp9P41245 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Mmp9P41245 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Mmp9P41245 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Mmp9P41245 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Mmp9P41245 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Mmp9P41245 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Mmp9P41245 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Mmp9P41245 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Mmp9P41245 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Mmp9P41245 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Mmp9P41245 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Mmp9P41245 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC19.17■□□□□ 0.66
Mmp9P41245 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Mmp9P41245 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Mmp9P41245 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Mmp9P41245 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Mmp9P41245 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms