Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Lmx1bO88609 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC21.04■□□□□ 0.96
Lmx1bO88609 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Lmx1bO88609 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Lmx1bO88609 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC21.04■□□□□ 0.96
Lmx1bO88609 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC21.04■□□□□ 0.96
Lmx1bO88609 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Lmx1bO88609 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Lmx1bO88609 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Lmx1bO88609 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Lmx1bO88609 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC21.01■□□□□ 0.95
Lmx1bO88609 Mir6538-201ENSMUST00000183713 110 ntBASIC21■□□□□ 0.95
Lmx1bO88609 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
Lmx1bO88609 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Lmx1bO88609 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Lmx1bO88609 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Lmx1bO88609 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Lmx1bO88609 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Lmx1bO88609 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Lmx1bO88609 Gm4799-201ENSMUST00000095396 657 ntBASIC20.98■□□□□ 0.95
Lmx1bO88609 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
Lmx1bO88609 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Lmx1bO88609 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Lmx1bO88609 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Lmx1bO88609 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Lmx1bO88609 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Lmx1bO88609 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Lmx1bO88609 Gm37136-201ENSMUST00000194368 194 ntBASIC20.96■□□□□ 0.95
Lmx1bO88609 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Lmx1bO88609 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lmx1bO88609 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Lmx1bO88609 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Lmx1bO88609 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Lmx1bO88609 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Lmx1bO88609 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Lmx1bO88609 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC20.95■□□□□ 0.94
Lmx1bO88609 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Lmx1bO88609 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Lmx1bO88609 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Lmx1bO88609 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lmx1bO88609 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Lmx1bO88609 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lmx1bO88609 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lmx1bO88609 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
Lmx1bO88609 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lmx1bO88609 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Lmx1bO88609 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lmx1bO88609 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Lmx1bO88609 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Lmx1bO88609 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Lmx1bO88609 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC20.91■□□□□ 0.94
Lmx1bO88609 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Lmx1bO88609 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Lmx1bO88609 Scarna2-201ENSMUST00000157560 414 ntBASIC20.9■□□□□ 0.94
Lmx1bO88609 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Lmx1bO88609 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC20.9■□□□□ 0.94
Lmx1bO88609 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Lmx1bO88609 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Lmx1bO88609 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Lmx1bO88609 Mir3960-201ENSMUST00000198213 73 ntBASIC20.89■□□□□ 0.93
Lmx1bO88609 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Lmx1bO88609 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Lmx1bO88609 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC20.88■□□□□ 0.93
Lmx1bO88609 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Lmx1bO88609 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC20.88■□□□□ 0.93
Lmx1bO88609 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Lmx1bO88609 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Lmx1bO88609 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lmx1bO88609 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Lmx1bO88609 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Lmx1bO88609 Pkd1-207ENSMUST00000228550 1050 ntBASIC20.87■□□□□ 0.93
Lmx1bO88609 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Lmx1bO88609 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC20.86■□□□□ 0.93
Lmx1bO88609 Cap2-205ENSMUST00000225824 1634 ntBASIC20.86■□□□□ 0.93
Lmx1bO88609 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Lmx1bO88609 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC20.86■□□□□ 0.93
Lmx1bO88609 Gm45364-201ENSMUST00000210883 159 ntBASIC20.86■□□□□ 0.93
Lmx1bO88609 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Lmx1bO88609 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC20.86■□□□□ 0.93
Lmx1bO88609 AC154454.1-201ENSMUST00000225253 216 ntBASIC20.85■□□□□ 0.93
Lmx1bO88609 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Lmx1bO88609 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Lmx1bO88609 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Lmx1bO88609 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC20.84■□□□□ 0.93
Lmx1bO88609 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Lmx1bO88609 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Lmx1bO88609 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Lmx1bO88609 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Lmx1bO88609 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Lmx1bO88609 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Lmx1bO88609 Gm16437-201ENSMUST00000025669 507 ntBASIC20.82■□□□□ 0.92
Lmx1bO88609 Gm9806-201ENSMUST00000051080 552 ntBASIC20.82■□□□□ 0.92
Lmx1bO88609 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Lmx1bO88609 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Lmx1bO88609 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Lmx1bO88609 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Lmx1bO88609 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Lmx1bO88609 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Lmx1bO88609 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Lmx1bO88609 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 10.1 ms