Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 PSMA2P1-201ENST00000526365 646 ntBASIC3.95□□□□□ -1.78
VSX1Q9NZR4 OR5D15P-201ENST00000531671 942 ntBASIC3.95□□□□□ -1.78
VSX1Q9NZR4 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.95□□□□□ -1.78
VSX1Q9NZR4 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.95□□□□□ -1.78
VSX1Q9NZR4 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.95□□□□□ -1.78
VSX1Q9NZR4 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.95□□□□□ -1.78
VSX1Q9NZR4 MTND6P33-201ENST00000571794 183 ntBASIC3.95□□□□□ -1.78
VSX1Q9NZR4 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.95□□□□□ -1.78
VSX1Q9NZR4 AF038458.1-201ENST00000588406 262 ntBASIC3.95□□□□□ -1.78
VSX1Q9NZR4 AC006116.10-201ENST00000591836 581 ntBASIC3.95□□□□□ -1.78
VSX1Q9NZR4 AC113139.1-201ENST00000605049 239 ntBASIC3.95□□□□□ -1.78
VSX1Q9NZR4 uc_338.34-201ENST00000617467 174 ntBASIC3.95□□□□□ -1.78
VSX1Q9NZR4 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
VSX1Q9NZR4 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
VSX1Q9NZR4 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VSX1Q9NZR4 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VSX1Q9NZR4 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.95□□□□□ -1.78
VSX1Q9NZR4 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VSX1Q9NZR4 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
VSX1Q9NZR4 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
VSX1Q9NZR4 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VSX1Q9NZR4 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
VSX1Q9NZR4 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VSX1Q9NZR4 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AP001486.2-201ENST00000561652 5113 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 RNU4-79P-201ENST00000362764 141 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 RNU6-1287P-201ENST00000362914 107 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 RNU6-263P-201ENST00000363811 107 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 U3.12-201ENST00000364498 214 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 SNORA32.2-201ENST00000384049 122 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 SNORA24.1-201ENST00000384401 135 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 RNU6-1060P-201ENST00000384664 107 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 MIR135A2-201ENST00000384854 100 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AL122016.1-201ENST00000403365 367 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AL592114.1-201ENST00000403842 483 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 RPS12P23-201ENST00000419579 400 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AC004866.2-201ENST00000438285 481 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 MTCO1P29-201ENST00000496868 288 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 TRBVA-201ENST00000498804 316 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 Y_RNA.691-201ENST00000516611 103 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 BTF3P12-201ENST00000519620 469 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 IGLV3-26-201ENST00000520756 302 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 SUMO2P20-201ENST00000520803 283 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AC107953.1-201ENST00000522216 297 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 RANP3-201ENST00000530970 276 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AP001781.1-201ENST00000530977 207 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AL121603.1-201ENST00000553815 142 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AC024619.4-201ENST00000580924 316 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AC008638.3-201ENST00000603341 463 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AL139395.1-201ENST00000603662 160 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AC020634.1-201ENST00000608701 549 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AL713922.2-201ENST00000619384 716 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AC121333.1-201ENST00000567488 2709 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 AL645937.1-201ENST00000641739 1652 ntBASIC3.94□□□□□ -1.78
VSX1Q9NZR4 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.94□□□□□ -1.78
VSX1Q9NZR4 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VSX1Q9NZR4 AC006026.1-201ENST00000444025 1803 ntBASIC3.93□□□□□ -1.78
VSX1Q9NZR4 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
VSX1Q9NZR4 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VSX1Q9NZR4 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.93□□□□□ -1.78
VSX1Q9NZR4 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
VSX1Q9NZR4 RNU1-15P-201ENST00000353977 144 ntBASIC3.93□□□□□ -1.78
VSX1Q9NZR4 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.93□□□□□ -1.78
VSX1Q9NZR4 Y_RNA.384-201ENST00000383909 102 ntBASIC3.93□□□□□ -1.78
VSX1Q9NZR4 SOD2P1-201ENST00000396543 562 ntBASIC3.93□□□□□ -1.78
VSX1Q9NZR4 AL356057.2-201ENST00000403318 432 ntBASIC3.93□□□□□ -1.78
VSX1Q9NZR4 MIR1302-11-201ENST00000408051 138 ntBASIC3.93□□□□□ -1.78
VSX1Q9NZR4 MIR1302-9-201ENST00000408365 138 ntBASIC3.93□□□□□ -1.78
VSX1Q9NZR4 MIR1302-10-201ENST00000408734 138 ntBASIC3.93□□□□□ -1.78
VSX1Q9NZR4 AC090774.1-201ENST00000435925 246 ntBASIC3.93□□□□□ -1.78
VSX1Q9NZR4 Y_RNA.654-201ENST00000497848 106 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms