Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 AC006378.2-201ENST00000623178 2476 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AL139811.1-201ENST00000424779 2299 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 RNA5SP72-201ENST00000364442 117 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 RNY4P34-201ENST00000364779 95 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 RNU6-877P-201ENST00000383868 107 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 RNU6-1293P-201ENST00000384077 107 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 SNORA51.6-201ENST00000384151 125 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 RNU6-692P-201ENST00000384496 107 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 FAT1P1-201ENST00000406588 507 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AL023807.1-201ENST00000407932 359 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 ATP5A1P2-201ENST00000412323 255 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AL354751.2-201ENST00000415471 210 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AL138785.1-201ENST00000425821 331 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 ISCA1P6-201ENST00000427740 390 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 RPL36P19-201ENST00000430744 301 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 SNORA71B-202ENST00000439232 272 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 RPS3AP12-201ENST00000443616 753 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 RPL39P36-201ENST00000490784 156 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AC106872.3-201ENST00000495104 446 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 FTH1P24-201ENST00000503502 462 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AC022447.3-201ENST00000506865 495 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 RAC1P2-201ENST00000511164 579 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 OR5B10P-201ENST00000532869 642 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AC008127.2-201ENST00000549925 1075 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 ARL2BPP2-201ENST00000550907 489 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 MIR4644-201ENST00000579929 84 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 HMGN1P30-201ENST00000589286 268 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AC007363.1-201ENST00000604736 620 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 SNORA62.6-201ENST00000606322 83 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AC068722.2-201ENST00000618734 544 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 RNU6-156P-201ENST00000621869 107 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AC091905.1-201ENST00000624400 311 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 U6.101-201ENST00000637707 76 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 AL136964.1-201ENST00000622038 2990 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 UBE3AP2-201ENST00000429033 2259 ntBASIC3.86□□□□□ -1.79
EBF3Q9H4W6 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
EBF3Q9H4W6 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
EBF3Q9H4W6 MTND5P28-201ENST00000438005 1594 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
EBF3Q9H4W6 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.85□□□□□ -1.79
EBF3Q9H4W6 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
EBF3Q9H4W6 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.85□□□□□ -1.79
EBF3Q9H4W6 FARSBP1-201ENST00000435808 1778 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
EBF3Q9H4W6 SNORA9-201ENST00000384215 133 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 RNA5SP239-201ENST00000410218 129 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 AC007390.1-201ENST00000415722 356 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.85□□□□□ -1.79
EBF3Q9H4W6 AL353193.1-201ENST00000421444 268 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 RPL30P3-201ENST00000424262 333 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 KCTD9P3-201ENST00000434597 1169 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.85□□□□□ -1.79
EBF3Q9H4W6 CYCSP35-201ENST00000451978 304 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 Z82190.1-201ENST00000454534 490 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 C1DP4-201ENST00000455429 424 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 TRBV26-201ENST00000456572 344 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
EBF3Q9H4W6 AC005726.1-201ENST00000494679 427 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.85□□□□□ -1.79
EBF3Q9H4W6 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.85□□□□□ -1.79
EBF3Q9H4W6 TMEM251P1-201ENST00000503717 318 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.85□□□□□ -1.79
EBF3Q9H4W6 Y_RNA.675-201ENST00000516389 149 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 AP003467.2-201ENST00000520175 319 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.85□□□□□ -1.79
EBF3Q9H4W6 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.85□□□□□ -1.79
EBF3Q9H4W6 AC125611.2-201ENST00000551907 647 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 CBX3P5-201ENST00000552017 521 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.85□□□□□ -1.79
EBF3Q9H4W6 AC107954.1-201ENST00000565906 727 ntBASIC3.85□□□□□ -1.79
EBF3Q9H4W6 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms