Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 UCA1.1-201ENST00000620952 75 ntBASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC4.28□□□□□ -1.72
CHMP4AQ9BY43 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 CCT4P2-201ENST00000233836 1548 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 RNU6-140P-201ENST00000384566 108 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 AC007919.1-201ENST00000429380 217 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 HMGB1P9-201ENST00000429856 646 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 AC004854.1-201ENST00000440356 349 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 ZNF736P11Y-201ENST00000442535 1213 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 ZNF736P12Y-201ENST00000443152 1243 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 KC877373.1-201ENST00000479066 408 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 LARP1BP2-201ENST00000486594 519 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 AC104090.1-201ENST00000506341 1171 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 AC118282.1-201ENST00000506408 765 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 RNU6-927P-201ENST00000516199 100 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 AC023538.1-201ENST00000534576 736 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 AL133271.1-201ENST00000538229 291 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 AC136618.2-201ENST00000575091 400 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 MIR5195-201ENST00000583555 115 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 MIR3616-201ENST00000584070 92 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 AC067852.3-201ENST00000589177 561 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 AC092953.2-201ENST00000608000 699 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 FTX_3.1-201ENST00000610451 147 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 AL359693.1-201ENST00000614959 2407 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 AC073073.2-201ENST00000609827 2578 ntBASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC4.27□□□□□ -1.73
CHMP4AQ9BY43 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 SNORA38.1-201ENST00000364172 131 ntBASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 AL031121.1-201ENST00000406553 254 ntBASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 AL359704.1-201ENST00000411586 781 ntBASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 SETP8-201ENST00000435341 628 ntBASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 AC233702.1-201ENST00000482905 502 ntBASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 RN7SKP60-201ENST00000516985 239 ntBASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 AC093012.1-202ENST00000549403 582 ntBASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 MTND4P33-201ENST00000556706 766 ntBASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 AL391261.3-201ENST00000557194 520 ntBASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 AC090888.1-201ENST00000561335 1141 ntBASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 AL158042.1-201ENST00000605338 460 ntBASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 uc_338.1-201ENST00000612113 180 ntBASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 AC079395.3-201ENST00000615161 484 ntBASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 AL136981.2-201ENST00000617319 734 ntBASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 AP002782.1-201ENST00000623107 614 ntBASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
CHMP4AQ9BY43 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 RNU6-931P-201ENST00000363850 107 ntBASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 MIR627-201ENST00000384979 97 ntBASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 RSU1P2-202ENST00000437884 485 ntBASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 MTCYBP3-201ENST00000445588 1137 ntBASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 TPT1P14-201ENST00000448018 505 ntBASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 RPL31P41-201ENST00000477967 372 ntBASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 MTND5P13-201ENST00000513046 1079 ntBASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 AC023050.2-201ENST00000544968 387 ntBASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 MRPS36P5-201ENST00000551909 298 ntBASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 NACAP3-201ENST00000552100 481 ntBASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 AC005951.2-201ENST00000576282 495 ntBASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 AC007349.4-201ENST00000608114 532 ntBASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 AL592295.2-201ENST00000612578 206 ntBASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 RNVU1-4-201ENST00000612985 164 ntBASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 AC009464.1-201ENST00000615731 469 ntBASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
CHMP4AQ9BY43 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 SNORA70.4-201ENST00000365509 134 ntBASIC4.24□□□□□ -1.73
CHMP4AQ9BY43 AL512633.1-201ENST00000399931 655 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms